getUniqueProcesses.Sequence: Get the list of unique Process instances attached to the Site...

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Get the list of unique Process instances attached to the Site objects aggregated by a Sequence object.

Usage

## S3 method for class 'Sequence'
getUniqueProcesses(this, ...)

Arguments

this	A Sequence object.
...	Not used.

Value

A list of Process objects.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see Sequence.

Examples

	# create a sequence object and attach processes
	p<-JC69()
	s<-Sequence(
               length=4,
               alphabets=list(NucleotideAlphabet()),
               processes=list(list(p,K80()),list(p))
               )
	# get the unique list of attached Process instances
	getUniqueProcesses(s)
	# via virtual field
	s$uniqueProcesses
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.