newMatrix.CodonSubst: New codon substitution matrix from PAML file

Description Usage Arguments Value Author(s) See Also

Description

New codon substitution matrix from PAML file.

Usage

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## S3 method for class 'CodonSubst'
newMatrix(name=NA, paml.file=NA, equ.dist=NA, ...)

Arguments

name

Object name

paml.file

PAML file.

equ.dist

Equilibrium distribution.

...

Not used.

Value

A process object inheriting from CodonSubst.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see CodonSubst.


phylosim documentation built on Nov. 22, 2019, 1:07 a.m.