setDeletionTolerance.Sequence: Set the deletion tolerance site-process specific parameter...

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Set the deletion tolerance site-process specific parameter for a collection of Site objects aggregated by a Sequence object. This method does some error checking and the calls setParameterAtSites(this=this,process=process,id="deletion.tolerance",value=value,index=index). See setParameterAtSites.Sequence for more details.

Usage

## S3 method for class 'Sequence'
setDeletionTolerance(this, process, value, index, ...)

Arguments

this	A Sequence object.
process	A Process object.
value	A numeric vector, recycled if shorter than the index vector.
index	An integer vector specifying a set of positions. It is set to 1:seq$length if omitted.
...	Not used.

Value

The Sequence object (invisible).

Author(s)

Botond Sipos, Gregory Jordan

See Also

setParameterAtSites.Sequence

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.