setRateParamList.TN93: Set the rate parameters

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Set the rate parameters.

The rate parameters are: Alpha1, Alpha2, Beta.

Usage

## S3 method for class 'TN93'
setRateParamList(this, value, ...)

Arguments

this	A TN93 object.
value	A list containing the rate parameters.
...	Not used.

Value

The list of rate parameters (invisible).

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see TN93.

Examples

	# create TN93 object
	p<-TN93()
	# set/get rate parameters
	setRateParamList(p,list(
		"Alpha1"=1,
		"Alpha2"=2,
		"Beta"=0.5
        ))
	getRateParamList(p)
	# set/get rate parameters via virtual field
	p$rateParamList<-list(
		"Alpha1"=1,
		"Alpha2"=1,
		"Beta"=3
        )
	p$rateParamList
	# get object summary
	summary(p)
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.