phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

A pipeline for the identification, within taxonomic groups, of orthologous sequence clusters from 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> as the first step in a phylogenetic analysis. The pipeline depends on a local alignment search tool and is, therefore, not dependent on differences in gene naming conventions and naming errors.

Package details

AuthorHannes Hettling [aut], Rutger Vos [aut], Alexander Zizka [aut], Dom Bennett [aut, cre], Alexandre Antonelli [aut]
MaintainerDom Bennett <[email protected]>
LicenseMIT + file LICENSE
Version1.0.0
URL https://github.com/ropensci/phylotaR#readme
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("phylotaR")

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phylotaR documentation built on July 31, 2018, 5:01 p.m.