Description Usage Arguments Value See Also Examples
Get slot data for either or sequences in a cluster of a vector of sequence IDs. Use list_seqrec_slots() for a list of available slots.
1 | get_sq_slot(phylota, cid = NULL, sid = NULL, slt_nm = list_seqrec_slots())
|
phylota |
Phylota object |
cid |
Cluster ID |
sid |
Sequence ID(s) |
slt_nm |
Slot name |
vector
Other tools-public: calc_mad
,
calc_wrdfrq
, drop_by_rank
,
drop_clstrs
, drop_sqs
,
get_clstr_slot
, get_nsqs
,
get_ntaxa
, get_stage_times
,
get_tx_slot
, get_txids
,
is_txid_in_clstr
,
is_txid_in_sq
,
list_clstrrec_slots
,
list_ncbi_ranks
,
list_seqrec_slots
,
list_taxrec_slots
,
plot_phylota_pa
,
plot_phylota_treemap
,
read_phylota
, write_sqs
1 2 3 4 5 | data('aotus')
random_sid <- sample(aotus@sids, 1)
(get_sq_slot(phylota = aotus, sid = random_sid, slt_nm = 'dfln'))
# see list_seqrec_slots() for available slots
(list_seqrec_slots())
|
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