get_sq_slot: Get slot data for each sequence

In phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

Description

Get slot data for either or sequences in a cluster of a vector of sequence IDs. Use list_seqrec_slots() for a list of available slots.

Usage

get_sq_slot(phylota, cid = NULL, sid = NULL, slt_nm = list_seqrec_slots())

Arguments

phylota	Phylota object
cid	Cluster ID
sid	Sequence ID(s)
slt_nm	Slot name

Value

vector

See Also

Other tools-public: calc_mad, calc_wrdfrq, drop_by_rank, drop_clstrs, drop_sqs, get_clstr_slot, get_nsqs, get_ntaxa, get_stage_times, get_tx_slot, get_txids, is_txid_in_clstr, is_txid_in_sq, list_clstrrec_slots, list_ncbi_ranks, list_seqrec_slots, list_taxrec_slots, plot_phylota_pa, plot_phylota_treemap, read_phylota, write_sqs

Examples

data('aotus')
random_sid <- sample(aotus@sids, 1)
(get_sq_slot(phylota = aotus, sid = random_sid, slt_nm = 'dfln'))
# see list_seqrec_slots() for available slots
(list_seqrec_slots())

phylotaR documentation built on May 1, 2019, 9:26 p.m.