Description Usage Arguments Slots See Also Examples
Multiple cluster records.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | ## S4 method for signature 'ClstrArc'
as.character(x)
## S4 method for signature 'ClstrArc'
show(object)
## S4 method for signature 'ClstrArc'
print(x)
## S4 method for signature 'ClstrArc'
str(object, max.level = 2L, ...)
## S4 method for signature 'ClstrArc'
summary(object)
## S4 method for signature 'ClstrArc,character'
x[[i]]
## S4 method for signature 'ClstrArc,character,missing,missing'
x[i, j, ..., drop = TRUE]
|
x |
|
object |
|
max.level |
Maximum level of nesting for str() |
... |
Further arguments for str() |
i |
cid(s) |
j |
Unused |
drop |
Unused |
ids
Vector of cluster record IDs
clstrs
List of ClstrArc named by ID
Other run-public: ClstrRec-class
,
Phylota-class
, SeqArc-class
,
SeqRec-class
, TaxDict-class
,
TaxRec-class
, clusters2_run
,
clusters_run
,
parameters_reset
, reset
,
restart
, run
,
setup
, taxise_run
1 2 3 4 5 6 7 8 9 10 11 12 | data('aotus')
clstrarc <- aotus@clstrs
# this is a ClstrArc object
# it contains cluster records
show(clstrarc)
# you can access its different data slots with @
clstrarc@ids # unique cluster ID
clstrarc@clstrs # list of cluster records
# access cluster records [[
(clstrarc[[clstrarc@ids[[1]]]]) # first cluster record
# generate new cluster archives with [
(clstrarc[clstrarc@ids[1:10]]) # first 10 clusters
|
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