read_phylota: Generate a Phylota object in R

In phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

Description

Creates a Phylota object containing information on clusters, sequences and taxonomy from the working directory of a completed pipeline.

Usage

read_phylota(wd)

Arguments

wd	Working directory

Value

Phylota

See Also

Other tools-public: calc_mad, calc_wrdfrq, drop_by_rank, drop_clstrs, drop_sqs, get_clstr_slot, get_nsqs, get_ntaxa, get_sq_slot, get_stage_times, get_tx_slot, get_txids, is_txid_in_clstr, is_txid_in_sq, list_clstrrec_slots, list_ncbi_ranks, list_seqrec_slots, list_taxrec_slots, plot_phylota_pa, plot_phylota_treemap, write_sqs

Examples

## Not run: 
  
  # Note, this example requires a wd with a completed phylotaR run
  phylota <- read_phylota(wd)

## End(Not run)

phylotaR documentation built on May 1, 2019, 9:26 p.m.