pla: Parallel Line Assays

Parallel Line Assays: Completely randomized design, Randomized Block design, and Latin squares design. Balanced data are fitted as described in the Ph.Eur. In the presence of missing values complete data analysis can be performed (with computation of Fieller's confidence intervals for the estimated potency), or imputation of values can be applied. The package contains a script such that a pdf-document with a report of an analysis of an assay can be produced from an input file with data of the assay. Here no knowledge of R is needed by the user.

AuthorJens Henrik Badsberg
Date of publication2015-09-09 21:19:32
MaintainerJens Henrik Badsberg <pla2015@badsberg.eu>
LicenseGPL (>= 2)
Version0.2

View on CRAN

Functions

AgarDiffusionAssay Man page
anova,ANY-method Man page
anova-methods Man page
anova,plaFit-method Man page
anova,pla-method Man page
as.array,assayFrame-method Man page
as.array,assayTable-method Man page
as.array,data.frame-method Man page
as.data.frame,assayFrame-method Man page
as.data.frame,assayTable-method Man page
as.data.frame,pla-method Man page
assayData-class Man page
assayFrame-class Man page
assayModel-class Man page
assayTable2frame Man page
assayTable-class Man page
as.table,assayFrame-method Man page
as.table,assayTable-method Man page
coef,ANY-method Man page
coef-methods Man page
coef,plaFit-method Man page
coef,pla-method Man page
confint,ANY-method Man page
confint-methods Man page
confint,plaFit-method Man page
confint,pla-method Man page
Corticotrophin Man page
data2assayFrame Man page
Diphteria Man page
Erythromycin Man page
Erythropoietin Man page
FactorIX Man page
Fiellers Man page
fit Man page
fitted,ANY-method Man page
fitted-methods Man page
fitted,plaFit-method Man page
fitted,pla-method Man page
HeparinSodium Man page
HepatitisB Man page
HepatitisBvaccine Man page
HumanHepatitis Man page
IPV Man page
jitterSteps Man page
lm.influence,ANY-method Man page
lm.influence-methods Man page
lm.influence,plaFit-method Man page
lm.influence,pla-method Man page
Nystatin Man page
pheur325 Man page
pla Man page
pla-class Man page
plaCRD Man page
plaCRD-class Man page
pla.fit Man page
plaFit-class Man page
plaLSD Man page
plaLSD-class Man page
pla-package Man page
pla.plots Man page
plaRBD Man page
plaRBD-class Man page
plot,ANY-method Man page
plot-methods Man page
plotMoreSamples Man page
plot,plaFit-method Man page
plot,pla-method Man page
plotSamples Man page
plotTwoSamples Man page
potency Man page
predict,ANY-method Man page
predict-methods Man page
predict,plaFit-method Man page
predict,pla-method Man page
print,ANY-method Man page
print,assayFrame-method Man page
print,assayTable-method Man page
print-methods Man page
print,plaFit-method Man page
print,pla-method Man page
readAssayTable Man page
reduceDimension Man page
residuals,ANY-method Man page
residuals-methods Man page
residuals,plaFit-method Man page
residuals,pla-method Man page
show,assayFrame-method Man page
show,assayTable-method Man page
summary,ANY-method Man page
summary-methods Man page
summary,plaFit-method Man page
summary,pla-method Man page
Turbidimetric Man page
Vancomycin Man page
vcov,ANY-method Man page
vcov-methods Man page
vcov,plaFit-method Man page
vcov,pla-method Man page

Files

pla
pla/inst
pla/inst/R.xtables
pla/inst/R.xtables/xtableValidity.R
pla/inst/R.xtables/xtablePotency.R
pla/inst/R.xtables/xtableLabels.R
pla/inst/R.xtables/xtableTable.R
pla/inst/R.xtables/xtableAnova.R
pla/inst/R.xtables/xtablesAssay.R
pla/inst/R.xtables/fun.R
pla/inst/R.xtables/xtabularAssay.R
pla/inst/R.xtables/xtableLatinSquare.R
pla/inst/R.xtables/xtables.R
pla/inst/R.xtables/xtableModel.R
pla/inst/R.xtables/xtableParameters.R
pla/inst/R.xtables/xtableHead.R
pla/inst/R.xtables/xtableTableCS.R
pla/inst/scripts
pla/inst/scripts/Makefile
pla/inst/scripts/DejaVu.csh
pla/inst/scripts/DejaVu.bat
pla/inst/scripts/data
pla/inst/scripts/data/Assay500000.txt
pla/inst/scripts/data/Assay000002.txt
pla/inst/scripts/data/Assay100100.txt
pla/inst/scripts/data/Assay757500.txt
pla/inst/scripts/data/Assay252500.txt
pla/inst/scripts/data/AssayTable.txt
pla/inst/scripts/data/Assay3.txt
pla/inst/scripts/data/Assay505050.txt
pla/inst/scripts/data/Assay2.txt
pla/inst/scripts/data/Assay1.txt
pla/inst/scripts/data/Assay000800.txt
pla/inst/scripts/data/Assay010010.txt
pla/inst/scripts/data/Assay505000.txt
pla/inst/scripts/data/Assay000600.txt
pla/inst/scripts/R
pla/inst/scripts/R/xtables.bak.R
pla/inst/scripts/R/xtables.R
pla/inst/scripts/Skeleton
pla/inst/scripts/Skeleton/Skeleton.Rnw
pla/inst/scripts/Skeleton/SkeletonDesign-xtable.Rnw
pla/inst/scripts/Skeleton/Skeleton-xtable.Rnw
pla/inst/scripts/BatchSubstitute.bat
pla/inst/vignettes
pla/inst/vignettes/Makefile
pla/inst/vignettes/PhEur
pla/inst/vignettes/PhEur/CorticotrophinST-xtable.Rnw
pla/inst/vignettes/PhEur/AntibioticAgarDiffusionAssay-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byOrder-W-xtable.Rnw
pla/inst/vignettes/PhEur/Makefile
pla/inst/vignettes/PhEur/Corticotrophin.Rnw
pla/inst/vignettes/PhEur/Agar-xtable.Rnw
pla/inst/vignettes/PhEur/AntibioticAgarDiffusionAssay.Rnw
pla/inst/vignettes/PhEur/CorticotrophinST.Rnw
pla/inst/vignettes/PhEur/Agar-impute-xtable.Rnw
pla/inst/vignettes/PhEur/data
pla/inst/vignettes/PhEur/data/HepatitisB_Error.txt
pla/inst/vignettes/PhEur/data/HepatitisB.txt
pla/inst/vignettes/PhEur/data/AntibioticAgarDiffusionAssay.txt
pla/inst/vignettes/PhEur/data/HepatitisB_byOrder.txt
pla/inst/vignettes/PhEur/data/AntibioticTurbidimetric.txt
pla/inst/vignettes/PhEur/data/CorticotrophinST.txt
pla/inst/vignettes/PhEur/data/HepatitisB_Error.wrong.txt
pla/inst/vignettes/PhEur/data/HepatitisB.B.txt
pla/inst/vignettes/PhEur/data/Agar-invalid.txt
pla/inst/vignettes/PhEur/data/HepatitisB_flop.txt
pla/inst/vignettes/PhEur/data/Agar.txt
pla/inst/vignettes/PhEur/data/Corticotrophin.txt
pla/inst/vignettes/PhEur/data/HepatitisB_Missing.txt
pla/inst/vignettes/PhEur/data/Agar-missing.txt
pla/inst/vignettes/PhEur/data/HepatitisB_byLabel.txt
pla/inst/vignettes/PhEur/AntibioticTurbidimetric.Rnw
pla/inst/vignettes/PhEur/R
pla/inst/vignettes/PhEur/R/xtables.R
pla/inst/vignettes/PhEur/AntibioticTurbidimetric-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB_Missing.Rnw
pla/inst/vignettes/PhEur/HepatitisB-B-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byLabel-W-xtable.Rnw
pla/inst/vignettes/PhEur/Agar-invalid-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byLabel-xtable.Rnw
pla/inst/vignettes/PhEur/Corticotrophin-xtable.Rnw
pla/inst/vignettes/PhEur/Corticotrophin-select-ST-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB_Error.Rnw
pla/inst/vignettes/PhEur/HepatitisB_Missing-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byOrder-xtable.Rnw
pla/inst/vignettes/PhEur/Agar-missing-xtable.Rnw
pla/inst/vignettes/PhEur/Corticotrophin-select-ST.Rnw
pla/inst/vignettes/PhEur/HepatitisB.Rnw
pla/inst/vignettes/CombiStat
pla/inst/vignettes/CombiStat/Diphteria-xtable.Rnw
pla/inst/vignettes/CombiStat/Makefile
pla/inst/vignettes/CombiStat/FactorIX.Rnw
pla/inst/vignettes/CombiStat/IPV_CompleteData-xtable.Rnw
pla/inst/vignettes/CombiStat/Diphteria-byLabel-xtable.Rnw
pla/inst/vignettes/CombiStat/Erythropoietin-xtable.Rnw
pla/inst/vignettes/CombiStat/Diphteria.Rnw
pla/inst/vignettes/CombiStat/FactorIX-xtable.Rnw
pla/inst/vignettes/CombiStat/Erythromycin.Rnw
pla/inst/vignettes/CombiStat/HeparinSodium.Rnw
pla/inst/vignettes/CombiStat/InactivatedPoliomyelitisVaccine-xtable.Rnw
pla/inst/vignettes/CombiStat/HumanHepatitisAimmunoglobulin-xtable.Rnw
pla/inst/vignettes/CombiStat/data
pla/inst/vignettes/CombiStat/data/Diphteria_byLabel.txt
pla/inst/vignettes/CombiStat/data/HumanHepatitis.txt
pla/inst/vignettes/CombiStat/data/IPV_Error.txt
pla/inst/vignettes/CombiStat/data/Diphteria.txt
pla/inst/vignettes/CombiStat/data/HepatitisBvaccine.txt
pla/inst/vignettes/CombiStat/data/Erythropoietin.txt
pla/inst/vignettes/CombiStat/data/Erythromycin.txt
pla/inst/vignettes/CombiStat/data/HeparinSodium_Error.txt
pla/inst/vignettes/CombiStat/data/IPV.txt
pla/inst/vignettes/CombiStat/data/FactorIX-T.txt
pla/inst/vignettes/CombiStat/data/HeparinSodium.txt
pla/inst/vignettes/CombiStat/data/IPV_CompleteData.txt
pla/inst/vignettes/CombiStat/data/IPV_Imputed.txt
pla/inst/vignettes/CombiStat/data/FactorIX.txt
pla/inst/vignettes/CombiStat/data/Nystatin.txt
pla/inst/vignettes/CombiStat/R
pla/inst/vignettes/CombiStat/R/xtables.R
pla/inst/vignettes/CombiStat/HeparinSodium_Error.Rnw
pla/inst/vignettes/CombiStat/IPV_Imputed.Rnw
pla/inst/vignettes/CombiStat/Nystatin-xtable.Rnw
pla/inst/vignettes/CombiStat/IPV_Imputed-xtable.Rnw
pla/inst/vignettes/CombiStat/HumanHepatitisAimmunoglobulin.Rnw
pla/inst/vignettes/CombiStat/IPV_CompleteData.Rnw
pla/inst/vignettes/CombiStat/InactivatedPoliomyelitisVaccine.Rnw
pla/inst/vignettes/CombiStat/InactivatedPoliomyelitisVaccine_Error.Rnw
pla/inst/vignettes/CombiStat/Erythropoietin.Rnw
pla/inst/vignettes/CombiStat/HepatitisBvaccine.Rnw
pla/inst/vignettes/CombiStat/HepatitisBvaccine-xtable.Rnw
pla/inst/vignettes/CombiStat/FactorIX-t-xtable.Rnw
pla/inst/vignettes/CombiStat/Nystatin.Rnw
pla/inst/vignettes/CombiStat/Erythromycin-xtable.Rnw
pla/inst/vignettes/CombiStat/HeparinSodium-xtable.Rnw
pla/inst/vignettes/Miscellaneous
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-1-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Makefile
pla/inst/vignettes/Miscellaneous/Vancomycin-CompleteData-xtable.Rnw
pla/inst/vignettes/Miscellaneous/ToothGrowth.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-Frame-xtable.Rnw
pla/inst/vignettes/Miscellaneous/data
pla/inst/vignettes/Miscellaneous/data/Vancomycin_outlier.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_tabular.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_wrong.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_check.txt
pla/inst/vignettes/Miscellaneous/data/AssayTable.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_frame.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_outlier_1.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_frame_NA.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_Error.txt
pla/inst/vignettes/Miscellaneous/R
pla/inst/vignettes/Miscellaneous/R/xtables.R
pla/inst/vignettes/Miscellaneous/Vancomycin-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin_check-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-2-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-tabularx.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin.Rnw
pla/inst/vignettes/Miscellaneous/ToothGrowth-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-xtable.Rnw
pla/NAMESPACE
pla/data
pla/data/HumanHepatitis.rda
pla/data/Corticotrophin.rda
pla/data/AgarDiffusionAssay.rda
pla/data/HeparinSodium.rda
pla/data/IPV.rda
pla/data/Vancomycin.rda
pla/data/Nystatin.rda
pla/data/HepatitisBvaccine.rda
pla/data/Diphteria.rda
pla/data/Turbidimetric.rda
pla/data/FactorIX.rda
pla/data/Erythropoietin.rda
pla/data/HepatitisB.rda
pla/data/Erythromycin.rda
pla/R
pla/R/classes.R pla/R/methodsFit.R pla/R/plotTwoSamples.R pla/R/imputeLatinSquares.R pla/R/imputeCRD.R pla/R/as.array.R pla/R/invalidBlockDesign.R pla/R/methodsData.R pla/R/checkPlaFrame.R pla/R/countFactorLevels.R pla/R/data2assayFrame.R pla/R/plaRBD.R pla/R/assayTable2frame.R pla/R/Fiellers.R pla/R/methodsPla.R pla/R/pla.fit.R pla/R/readAssayTable.R pla/R/extractAlpha.R pla/R/multiplyByFactor.R pla/R/jitterSteps.R pla/R/invalidLatinSquare.R pla/R/plaCRD.R pla/R/findArrayDescription.R pla/R/transposeTable.R pla/R/plaLSD.R pla/R/pheur325.R pla/R/imputeRBD.R pla/R/pla.plots.R pla/R/apermAssay.R pla/R/reduceDimension.R pla/R/pla.R pla/R/imputeRBDframe.R pla/R/string2design.R pla/R/potency.R pla/R/plotSamples.R pla/R/insertTable.R pla/R/plotMoreSamples.R
pla/MD5
pla/DESCRIPTION
pla/man
pla/man/Work
pla/man/Work/reduceDimension.Rd
pla/man/readAssayTable.Rd pla/man/Turbidimetric.Rd pla/man/HeparinSodium.Rd pla/man/assayTable2frame.Rd pla/man/pheur325.Rd pla/man/Erythropoietin.Rd pla/man/Diphteria.Rd pla/man/HepatitisB.Rd pla/man/Erythromycin.Rd pla/man/Corticotrophin.Rd pla/man/pla-package.Rd pla/man/pla.fit.Rd pla/man/data2assayFrame.Rd pla/man/FactorIX.Rd pla/man/Nystatin.Rd pla/man/potency.Rd pla/man/AgarDiffusionAssay.Rd pla/man/pla.Rd pla/man/jitterSteps.Rd pla/man/plotSamples.Rd pla/man/Fiellers.Rd pla/man/pla.plots.Rd pla/man/HepatitisBvaccine.Rd pla/man/Vancomycin.Rd pla/man/IPV.Rd pla/man/HumanHepatitis.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.