pla: Parallel Line Assays

Parallel Line Assays: Completely randomized design, Randomized Block design, and Latin squares design. Balanced data are fitted as described in the Ph.Eur. In the presence of missing values complete data analysis can be performed (with computation of Fieller's confidence intervals for the estimated potency), or imputation of values can be applied. The package contains a script such that a pdf-document with a report of an analysis of an assay can be produced from an input file with data of the assay. Here no knowledge of R is needed by the user.

AuthorJens Henrik Badsberg
Date of publication2015-09-09 21:19:32
MaintainerJens Henrik Badsberg <pla2015@badsberg.eu>
LicenseGPL (>= 2)
Version0.2

View on CRAN

Files in this package

pla
pla/inst
pla/inst/R.xtables
pla/inst/R.xtables/xtableValidity.R
pla/inst/R.xtables/xtablePotency.R
pla/inst/R.xtables/xtableLabels.R
pla/inst/R.xtables/xtableTable.R
pla/inst/R.xtables/xtableAnova.R
pla/inst/R.xtables/xtablesAssay.R
pla/inst/R.xtables/fun.R
pla/inst/R.xtables/xtabularAssay.R
pla/inst/R.xtables/xtableLatinSquare.R
pla/inst/R.xtables/xtables.R
pla/inst/R.xtables/xtableModel.R
pla/inst/R.xtables/xtableParameters.R
pla/inst/R.xtables/xtableHead.R
pla/inst/R.xtables/xtableTableCS.R
pla/inst/scripts
pla/inst/scripts/Makefile
pla/inst/scripts/DejaVu.csh
pla/inst/scripts/DejaVu.bat
pla/inst/scripts/data
pla/inst/scripts/data/Assay500000.txt
pla/inst/scripts/data/Assay000002.txt
pla/inst/scripts/data/Assay100100.txt
pla/inst/scripts/data/Assay757500.txt
pla/inst/scripts/data/Assay252500.txt
pla/inst/scripts/data/AssayTable.txt
pla/inst/scripts/data/Assay3.txt
pla/inst/scripts/data/Assay505050.txt
pla/inst/scripts/data/Assay2.txt
pla/inst/scripts/data/Assay1.txt
pla/inst/scripts/data/Assay000800.txt
pla/inst/scripts/data/Assay010010.txt
pla/inst/scripts/data/Assay505000.txt
pla/inst/scripts/data/Assay000600.txt
pla/inst/scripts/R
pla/inst/scripts/R/xtables.bak.R
pla/inst/scripts/R/xtables.R
pla/inst/scripts/Skeleton
pla/inst/scripts/Skeleton/Skeleton.Rnw
pla/inst/scripts/Skeleton/SkeletonDesign-xtable.Rnw
pla/inst/scripts/Skeleton/Skeleton-xtable.Rnw
pla/inst/scripts/BatchSubstitute.bat
pla/inst/vignettes
pla/inst/vignettes/Makefile
pla/inst/vignettes/PhEur
pla/inst/vignettes/PhEur/CorticotrophinST-xtable.Rnw
pla/inst/vignettes/PhEur/AntibioticAgarDiffusionAssay-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byOrder-W-xtable.Rnw
pla/inst/vignettes/PhEur/Makefile
pla/inst/vignettes/PhEur/Corticotrophin.Rnw
pla/inst/vignettes/PhEur/Agar-xtable.Rnw
pla/inst/vignettes/PhEur/AntibioticAgarDiffusionAssay.Rnw
pla/inst/vignettes/PhEur/CorticotrophinST.Rnw
pla/inst/vignettes/PhEur/Agar-impute-xtable.Rnw
pla/inst/vignettes/PhEur/data
pla/inst/vignettes/PhEur/data/HepatitisB_Error.txt
pla/inst/vignettes/PhEur/data/HepatitisB.txt
pla/inst/vignettes/PhEur/data/AntibioticAgarDiffusionAssay.txt
pla/inst/vignettes/PhEur/data/HepatitisB_byOrder.txt
pla/inst/vignettes/PhEur/data/AntibioticTurbidimetric.txt
pla/inst/vignettes/PhEur/data/CorticotrophinST.txt
pla/inst/vignettes/PhEur/data/HepatitisB_Error.wrong.txt
pla/inst/vignettes/PhEur/data/HepatitisB.B.txt
pla/inst/vignettes/PhEur/data/Agar-invalid.txt
pla/inst/vignettes/PhEur/data/HepatitisB_flop.txt
pla/inst/vignettes/PhEur/data/Agar.txt
pla/inst/vignettes/PhEur/data/Corticotrophin.txt
pla/inst/vignettes/PhEur/data/HepatitisB_Missing.txt
pla/inst/vignettes/PhEur/data/Agar-missing.txt
pla/inst/vignettes/PhEur/data/HepatitisB_byLabel.txt
pla/inst/vignettes/PhEur/AntibioticTurbidimetric.Rnw
pla/inst/vignettes/PhEur/R
pla/inst/vignettes/PhEur/R/xtables.R
pla/inst/vignettes/PhEur/AntibioticTurbidimetric-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB_Missing.Rnw
pla/inst/vignettes/PhEur/HepatitisB-B-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byLabel-W-xtable.Rnw
pla/inst/vignettes/PhEur/Agar-invalid-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byLabel-xtable.Rnw
pla/inst/vignettes/PhEur/Corticotrophin-xtable.Rnw
pla/inst/vignettes/PhEur/Corticotrophin-select-ST-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB_Error.Rnw
pla/inst/vignettes/PhEur/HepatitisB_Missing-xtable.Rnw
pla/inst/vignettes/PhEur/HepatitisB-byOrder-xtable.Rnw
pla/inst/vignettes/PhEur/Agar-missing-xtable.Rnw
pla/inst/vignettes/PhEur/Corticotrophin-select-ST.Rnw
pla/inst/vignettes/PhEur/HepatitisB.Rnw
pla/inst/vignettes/CombiStat
pla/inst/vignettes/CombiStat/Diphteria-xtable.Rnw
pla/inst/vignettes/CombiStat/Makefile
pla/inst/vignettes/CombiStat/FactorIX.Rnw
pla/inst/vignettes/CombiStat/IPV_CompleteData-xtable.Rnw
pla/inst/vignettes/CombiStat/Diphteria-byLabel-xtable.Rnw
pla/inst/vignettes/CombiStat/Erythropoietin-xtable.Rnw
pla/inst/vignettes/CombiStat/Diphteria.Rnw
pla/inst/vignettes/CombiStat/FactorIX-xtable.Rnw
pla/inst/vignettes/CombiStat/Erythromycin.Rnw
pla/inst/vignettes/CombiStat/HeparinSodium.Rnw
pla/inst/vignettes/CombiStat/InactivatedPoliomyelitisVaccine-xtable.Rnw
pla/inst/vignettes/CombiStat/HumanHepatitisAimmunoglobulin-xtable.Rnw
pla/inst/vignettes/CombiStat/data
pla/inst/vignettes/CombiStat/data/Diphteria_byLabel.txt
pla/inst/vignettes/CombiStat/data/HumanHepatitis.txt
pla/inst/vignettes/CombiStat/data/IPV_Error.txt
pla/inst/vignettes/CombiStat/data/Diphteria.txt
pla/inst/vignettes/CombiStat/data/HepatitisBvaccine.txt
pla/inst/vignettes/CombiStat/data/Erythropoietin.txt
pla/inst/vignettes/CombiStat/data/Erythromycin.txt
pla/inst/vignettes/CombiStat/data/HeparinSodium_Error.txt
pla/inst/vignettes/CombiStat/data/IPV.txt
pla/inst/vignettes/CombiStat/data/FactorIX-T.txt
pla/inst/vignettes/CombiStat/data/HeparinSodium.txt
pla/inst/vignettes/CombiStat/data/IPV_CompleteData.txt
pla/inst/vignettes/CombiStat/data/IPV_Imputed.txt
pla/inst/vignettes/CombiStat/data/FactorIX.txt
pla/inst/vignettes/CombiStat/data/Nystatin.txt
pla/inst/vignettes/CombiStat/R
pla/inst/vignettes/CombiStat/R/xtables.R
pla/inst/vignettes/CombiStat/HeparinSodium_Error.Rnw
pla/inst/vignettes/CombiStat/IPV_Imputed.Rnw
pla/inst/vignettes/CombiStat/Nystatin-xtable.Rnw
pla/inst/vignettes/CombiStat/IPV_Imputed-xtable.Rnw
pla/inst/vignettes/CombiStat/HumanHepatitisAimmunoglobulin.Rnw
pla/inst/vignettes/CombiStat/IPV_CompleteData.Rnw
pla/inst/vignettes/CombiStat/InactivatedPoliomyelitisVaccine.Rnw
pla/inst/vignettes/CombiStat/InactivatedPoliomyelitisVaccine_Error.Rnw
pla/inst/vignettes/CombiStat/Erythropoietin.Rnw
pla/inst/vignettes/CombiStat/HepatitisBvaccine.Rnw
pla/inst/vignettes/CombiStat/HepatitisBvaccine-xtable.Rnw
pla/inst/vignettes/CombiStat/FactorIX-t-xtable.Rnw
pla/inst/vignettes/CombiStat/Nystatin.Rnw
pla/inst/vignettes/CombiStat/Erythromycin-xtable.Rnw
pla/inst/vignettes/CombiStat/HeparinSodium-xtable.Rnw
pla/inst/vignettes/Miscellaneous
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-1-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Makefile
pla/inst/vignettes/Miscellaneous/Vancomycin-CompleteData-xtable.Rnw
pla/inst/vignettes/Miscellaneous/ToothGrowth.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-Frame-xtable.Rnw
pla/inst/vignettes/Miscellaneous/data
pla/inst/vignettes/Miscellaneous/data/Vancomycin_outlier.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_tabular.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_wrong.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_check.txt
pla/inst/vignettes/Miscellaneous/data/AssayTable.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_frame.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_outlier_1.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_frame_NA.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin.txt
pla/inst/vignettes/Miscellaneous/data/Vancomycin_Error.txt
pla/inst/vignettes/Miscellaneous/R
pla/inst/vignettes/Miscellaneous/R/xtables.R
pla/inst/vignettes/Miscellaneous/Vancomycin-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin_check-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-2-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-tabularx.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin.Rnw
pla/inst/vignettes/Miscellaneous/ToothGrowth-xtable.Rnw
pla/inst/vignettes/Miscellaneous/Vancomycin-Impute-xtable.Rnw
pla/NAMESPACE
pla/data
pla/data/HumanHepatitis.rda
pla/data/Corticotrophin.rda
pla/data/AgarDiffusionAssay.rda
pla/data/HeparinSodium.rda
pla/data/IPV.rda
pla/data/Vancomycin.rda
pla/data/Nystatin.rda
pla/data/HepatitisBvaccine.rda
pla/data/Diphteria.rda
pla/data/Turbidimetric.rda
pla/data/FactorIX.rda
pla/data/Erythropoietin.rda
pla/data/HepatitisB.rda
pla/data/Erythromycin.rda
pla/R
pla/R/classes.R pla/R/methodsFit.R pla/R/plotTwoSamples.R pla/R/imputeLatinSquares.R pla/R/imputeCRD.R pla/R/as.array.R pla/R/invalidBlockDesign.R pla/R/methodsData.R pla/R/checkPlaFrame.R pla/R/countFactorLevels.R pla/R/data2assayFrame.R pla/R/plaRBD.R pla/R/assayTable2frame.R pla/R/Fiellers.R pla/R/methodsPla.R pla/R/pla.fit.R pla/R/readAssayTable.R pla/R/extractAlpha.R pla/R/multiplyByFactor.R pla/R/jitterSteps.R pla/R/invalidLatinSquare.R pla/R/plaCRD.R pla/R/findArrayDescription.R pla/R/transposeTable.R pla/R/plaLSD.R pla/R/pheur325.R pla/R/imputeRBD.R pla/R/pla.plots.R pla/R/apermAssay.R pla/R/reduceDimension.R pla/R/pla.R pla/R/imputeRBDframe.R pla/R/string2design.R pla/R/potency.R pla/R/plotSamples.R pla/R/insertTable.R pla/R/plotMoreSamples.R
pla/MD5
pla/DESCRIPTION
pla/man
pla/man/Work
pla/man/Work/reduceDimension.Rd
pla/man/readAssayTable.Rd pla/man/Turbidimetric.Rd pla/man/HeparinSodium.Rd pla/man/assayTable2frame.Rd pla/man/pheur325.Rd pla/man/Erythropoietin.Rd pla/man/Diphteria.Rd pla/man/HepatitisB.Rd pla/man/Erythromycin.Rd pla/man/Corticotrophin.Rd pla/man/pla-package.Rd pla/man/pla.fit.Rd pla/man/data2assayFrame.Rd pla/man/FactorIX.Rd pla/man/Nystatin.Rd pla/man/potency.Rd pla/man/AgarDiffusionAssay.Rd pla/man/pla.Rd pla/man/jitterSteps.Rd pla/man/plotSamples.Rd pla/man/Fiellers.Rd pla/man/pla.plots.Rd pla/man/HepatitisBvaccine.Rd pla/man/Vancomycin.Rd pla/man/IPV.Rd pla/man/HumanHepatitis.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.