Man pages for pleioh2g
Estimation of Pleiotropic Heritability from Genome-Wide Association Studies (GWAS) Summary Statistics
| Cal_cor_pleiotropic_h2 | Compute a vector of pleioh2g for all diseases before... |
| Cal_cor_pleiotropic_h2_corrected_single | Compute single pleioh2g for target disease after correction... |
| Cal_cor_pleiotropic_h2_single | Compute single pleioh2g for target disease before correction... |
| Cal_cor_test_single | Compute inversed elements for the target disease in bias... |
| Cal_rg_h2g_alltraits | Compute rg + h2g |
| Cal_rg_h2g_jk_alltraits | genomic-block jackknife and compute rg + h2g |
| generate_proposal_sample_changea_cor | Generate samples based on sampling covariance matrix and rg... |
| h2_liability | Convert Heritability to Liability Scale |
| h2_vector | h2 vector for 62 traits |
| h2_vector_mat | h2 jk matrix for 62 traits |
| ldsc_h2 | Estimate heritability - refer to ldscr R package... |
| ldsc_rg | Estimate cross-trait genetic correlations (Robust Version) -... |
| make_weights | Internal Function to make weights - refer to ldscr R package... |
| merge_sumstats | Merging summary statistics with LD-score files - refer to... |
| perform_analysis | Internal function to perform LDSC heritability/covariance... |
| pleiotropyh2_cor_computing_single | Compute pleioh2g after bias correction for target disease |
| pleiotropyh2_cor_computing_single_prune | Compute pleioh2g after bias correction for target disease |
| pleiotropyh2_nocor_computing_single | Compute pleioh2g before bias correction for target disease |
| Prune_disease_selection_DTrgzscore | Prune disease selection |
| pruning_pleioh2g_wrapper | Perform pruning in computing pleioh2g and correct bias |
| read_ld | Read ld from either internal or external file - refer to... |
| read_m | Read M from either internal or external file - refer to ldscr... |
| read_sumstats | Read summary statistics from either internal or external file... |
| read_wld | Read wld from either internal or external file - refer to... |
| Results_full_rg | Genetic correlation matrix for 62 traits |
| Results_full_rg_array | Jackknife array of genetic correlations (62 traits) |
| Rg_mat_z | Genetic correlation Z matrix for 62 traits |
| sumstats_munged_example_input | Example munged dataframe - refer to ldscr R package... |
