read_sumstats: Read summary statistics from either internal or external file...

In pleioh2g: Estimation of Pleiotropic Heritability from Genome-Wide Association Studies (GWAS) Summary Statistics

Read summary statistics from either internal or external file - refer to ldscr R package (https://github.com/mglev1n/ldscr)

Description

'read_sumstats()' Read summary statistics from either internal or external file

Usage

read_sumstats(munged_sumstats, name)

Arguments

munged_sumstats	Either a dataframe, or a path to a file containing munged summary statistics. Must contain at least columns named 'SNP' (rsid), 'A1' (effect allele), 'A2' (non-effect allele), 'N' (total sample size) and 'Z' (Z-score)
name	trait name

Value

A data frame (tibble) containing GWAS summary statistics for the specified trait. The returned object will always contain at least the following columns:

• SNP: SNP identifier (rsID).

• A1: Effect allele.

• A2: Non-effect allele.

• N: Total sample size for the SNP.

• Z: Z-score of SNP-trait association.

pleioh2g documentation built on March 9, 2026, 5:07 p.m.