read_ld: Read ld from either internal or external file - refer to...
In pleioh2g: Estimation of Pleiotropic Heritability from Genome-Wide Association Studies (GWAS) Summary Statistics
read_ld R Documentation
Read ld from either internal or external file - refer to ldscr R package (https://github.com/mglev1n/ldscr)
Description
'read_ld()' Read ld from either internal or external file.
Usage
read_ld(ld)
Arguments
ld
(character) Path to directory containing ld score files, ending in '*.l2.ldscore.gz'. Default is 'NA', which will utilize the built-in ld score files from Pan-UK Biobank for the ancestry specified in 'ancestry'.
Value
A data frame (tibble) containing LD score information read from the specified directory.
Each row corresponds to a SNP, and columns typically include:
-
CHR: Chromosome number.
-
SNP: SNP identifier (rsID).
-
BP: Base pair position.
-
L2: LD score value.
-
M: Number of SNPs used in the LD score computation.
pleioh2g documentation built on March 9, 2026, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| read_ld | R Documentation |
Read ld from either internal or external file - refer to ldscr R package (https://github.com/mglev1n/ldscr)
Description
'read_ld()' Read ld from either internal or external file.
Usage
read_ld(ld)
Arguments
ld |
(character) Path to directory containing ld score files, ending in '*.l2.ldscore.gz'. Default is 'NA', which will utilize the built-in ld score files from Pan-UK Biobank for the ancestry specified in 'ancestry'. |
Value
A data frame (tibble) containing LD score information read from the specified directory. Each row corresponds to a SNP, and columns typically include:
-
CHR: Chromosome number. -
SNP: SNP identifier (rsID). -
BP: Base pair position. -
L2: LD score value. -
M: Number of SNPs used in the LD score computation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.