add_dup_markers: Add back duplicate markers after mapping

In polymapR: Linkage Analysis in Outcrossing Polyploids

Add back duplicate markers after mapping

Description

Often there will be duplicate markers that can be put aside to speed up mapping. These may be added back to the maps afterwards.

Usage

add_dup_markers(maplist, bin_list, marker_assignments = NULL)

Arguments

maplist	A list of maps. Output of MDSMap_from_list.
bin_list	A list of marker bins containing marker duplicates. One of the list outputs of screen_for_duplicate_markers
marker_assignments	Optional argument to include the marker_assignments (output of check_marker_assignment). If included, marker assignment information will also be copied.

Value

A list with the following items:

maplist

List of maps, now with duplicate markers added

marker_assignments

If required, marker assignment list with duplicate markers added

polymapR documentation built on Nov. 5, 2023, 1:09 a.m.