Files in polymapR
Linkage Analysis in Outcrossing Polyploids
MD5
NAMESPACE
DESCRIPTION
R/sysdata.rda
R/exported_functions.R
R/r6_functions.R
R/r2_functions.R
R/roxygen_datasets.R
R/polymapR-package.R
R/r3_functions.R
R/r4_functions.R
R/p4_functions.R
R/aiding_functions.R
inst/CITATION
inst/doc/Vignette_polymapR.R
inst/doc/Vignette_genotype_probabilities.Rmd
inst/doc/Vignette_polymapR.Rmd
inst/doc/Vignette_polymapR.html
inst/doc/Vignette_genotype_probabilities.R
inst/doc/Vignette_genotype_probabilities.html
build/vignette.rds
build/partial.rdb
vignettes/bibliography.bib
vignettes/biomed-central.csl
vignettes/genoprobsdata.RData
vignettes/Vignette_genotype_probabilities.Rmd
vignettes/Vignette_polymapR.Rmd
vignettes/data
vignettes/polymapR_vignette.RData
vignettes/figures/cluster_per_LG_P1.3.png
vignettes/figures/P1_bridges.png
vignettes/figures/P2_bridges.png
vignettes/figures/LG1_check_map_plotB.png
vignettes/figures/LG1_check_map_plotA.png
vignettes/figures/meiosis_4x.png
vignettes/figures/p1_clustering_gp.png
vignettes/figures/gp_overview.png
vignettes/figures/dup_indivs.png
vignettes/figures/p2_clustering_gp.png
vignettes/figures/maxPdist.png
data/SN_SS_P1.rda
data/chk1.rda
data/phased.maplist.rda
data/SN_DN_P2.rda
data/P2_DxN_Assigned.rda
data/integrated.maplist.rda
data/SN_SS_P2.rda
data/screened_data3.rda
data/segregating_data.rda
data/maplist_P1_subset.rda
data/screened_data2.rda
data/map2.rda
data/exampleRAD_mapping.rda
data/SN_DN_P1.rda
data/P1_homologues.rda
data/maplist_P1.rda
data/P1_SxS_Assigned.rda
data/marker_assignments_P2.rda
data/screened_data.rda
data/map1.rda
data/maplist_P2_subset.rda
data/SN_SN_P2.rda
data/P2_SxS_Assigned.rda
data/all_linkages_list_P1_subset.rda
data/P2_homologues_triploid.rda
data/gp_df.rda
data/LGHomDf_P2_2.rda
data/marker_assignments_P1.rda
data/LGHomDf_P1_1.rda
data/SN_SN_P1.rda
data/map3.rda
data/all_linkages_list_P1.rda
data/LGHomDf_P2_1.rda
data/P2_SxS_Assigned_2.rda
data/P2_homologues.rda
data/SN_SN_P2_triploid.rda
data/all_linkages_list_P1_split.rda
data/TRI_dosages.rda
data/P1_DxN_Assigned.rda
data/mout.rda
data/ALL_dosages.rda
man/p4_functions.Rd
man/write_pwd_list.Rd
man/define_LG_structure.Rd
man/write.mct.Rd
man/exampleRAD_mapping.Rd
man/screen_for_duplicate_markers.Rd
man/consensus_LG_assignment.Rd
man/test_prefpairing.Rd
man/P1_SxS_Assigned.Rd
man/gp_df.Rd
man/P1_homologues.Rd
man/map2.Rd
man/write_nested_list.Rd
man/r_LOD_plot.Rd
man/gp_overview.Rd
man/marker_binning.Rd
man/all_linkages_list_P1.Rd
man/convert_marker_dosages.Rd
man/compare_maps.Rd
man/merge_homologues.Rd
man/checkF1.Rd
man/r3_functions.Rd
man/calcSegtypeInfo.Rd
man/ALL_dosages.Rd
man/check_map.Rd
man/plot_phased_maplist.Rd
man/linkage.gp.Rd
man/cluster_SN_markers.Rd
man/SN_SN_P1.Rd
man/convert_polyRAD.Rd
man/SNSN_LOD_deviations.Rd
man/correctDosages.Rd
man/plot_hom_vs_LG.Rd
man/phased.maplist.Rd
man/bridgeHomologues.Rd
man/r4_functions.Rd
man/add_dup_markers.Rd
man/get_markertype_combinations.Rd
man/createTetraOriginInput.Rd
man/phase_SN_diploid.Rd
man/convert_updog.Rd
man/screen_for_NA_values.Rd
man/cluster_per_LG.Rd
man/PCA_progeny.Rd
man/screen_for_duplicate_individuals.Rd
man/polymapR-package.Rd
man/assign_linkage_group.Rd
man/map1.Rd
man/chk1.Rd
man/plot_map.Rd
man/check_maxP.Rd
man/mout.Rd
man/write.TSNPM.Rd
man/r6_functions.Rd
man/marker_data_summary.Rd
man/plot_linkage_df.Rd
man/write.pwd.Rd
man/finish_linkage_analysis.Rd
man/parental_quantities.Rd
man/overviewSNlinks.Rd
man/homologue_lg_assignment.Rd
man/check_marker_assignment.Rd
man/r2_functions.Rd
man/map3.Rd
man/LGHomDf_P1_1.Rd
man/maplist_P1.Rd
man/create_phased_maplist.Rd
man/MDSMap_from_list.Rd
man/consensus_LG_names.Rd
man/integrated.maplist.Rd
man/screen_for_duplicate_individuals.gp.Rd
man/linkage.Rd
man/assign_SN_SN.Rd
