write.TSNPM: Write TetraploidSNPMap input file

In polymapR: Linkage Analysis in Outcrossing Polyploids

Write TetraploidSNPMap input file

Description

Output the phased linkage map files into format readable by TetraploidSNPMap (Hackett et al. 2017) to perform QTL analysis.

Usage

write.TSNPM(
  phased.maplist,
  outputdir = "TetraploidSNPMap_QTLfiles",
  filename = "TSNPM",
  ploidy,
  verbose = FALSE
)

Arguments

phased.maplist	Phased maps in list format, the output of create_phased_maplist
outputdir	Directory to which TetraploidSNPMap files are written, by default written to "TetraploidSNPMap_QTLfiles" folder
filename	Character string of filename stem to write the output files to, by default "TSNPM" with linkage groups names appended
ploidy	The ploidy of the species, currently only 4 is supported by TetraploidSNPMap
verbose	Should messages be sent to stdout?

Value

NULL

Examples

## Not run: 
data("phased.maplist")
write.TSNPM(phased.maplist,ploidy=4)
## End(Not run)

polymapR documentation built on Nov. 5, 2023, 1:09 a.m.