parental_quantities: Calculate frequency of each markertype.

In polymapR: Linkage Analysis in Outcrossing Polyploids

Calculate frequency of each markertype.

Description

Plots and returns frequency information for each markertype.

Usage

parental_quantities(
  dosage_matrix,
  parent1 = "P1",
  parent2 = "P2",
  log = NULL,
  ...
)

Arguments

dosage_matrix	An integer matrix with markers in rows and individuals in columns.
parent1	Character string specifying the first (usually maternal) parentname.
parent2	Character string specifying the second (usually paternal) parentname.
log	Character string specifying the log filename to which standard output should be written. If NULL log is send to stdout.
...	Arguments passed to barplot

Value

A named vector containing the frequency of each markertype in the dataset.

Examples

data("ALL_dosages","screened_data")
parental_quantities(dosage_matrix=ALL_dosages)
parental_quantities(dosage_matrix=screened_data)

polymapR documentation built on Nov. 5, 2023, 1:09 a.m.