API for polymapR
Linkage Analysis in Outcrossing Polyploids

Global functions
ALL_dosages Man page
LGHomDf_P1_1 Man page
LGHomDf_P2_1 Man page
LGHomDf_P2_2 Man page
MDSMap_from_list Man page Source code
Mode Man page Source code
P1_DxN_Assigned Man page
P1_SxS_Assigned Man page
P1_homologues Man page
P2_DxN_Assigned Man page
P2_SxS_Assigned Man page
P2_SxS_Assigned_2 Man page
P2_homologues Man page
P2_homologues_triploid Man page
PCA_progeny Man page Source code
SNSN_LOD_deviations Man page Source code
SN_DN_P1 Man page
SN_DN_P2 Man page
SN_SN_P1 Man page
SN_SN_P2 Man page
SN_SN_P2_triploid Man page
SN_SS_P1 Man page
SN_SS_P2 Man page
TRI_dosages Man page
add_dup_markers Man page Source code
all_linkages_list_P1 Man page
all_linkages_list_P1_split Man page
all_linkages_list_P1_subset Man page
assembleDuplexLinks Man page
assign_SN_SN Man page Source code
assign_linkage_group Man page Source code
bridgeHomologues Man page Source code
calcPotShifts Man page Source code
calcSegtypeInfo Man page Source code
calc_binning_thresholds Man page Source code
calc_q1 Man page Source code
calc_q2 Man page Source code
calc_q3 Man page Source code
calc_qall Man page Source code
checkF1 Man page Source code
checkFilename Man page Source code
check_map Man page Source code
check_marker_assignment Man page Source code
chk2integer Man page Source code
cluster_SN_markers Man page Source code
cluster_per_LG Man page Source code
colour.bar Man page Source code
consensus_LG_assignment Man page Source code
consensus_LG_names Man page Source code
convert_marker_dosages Man page Source code
correctDosages Man page Source code
createChmHomList Man page Source code
createMap Man page Source code
createTetraOriginInput Man page Source code
create_phased_maplist Man page Source code
define_LG_structure Man page Source code
digamfrq Man page Source code
finish_linkage_analysis Man page Source code
gcd Man page Source code
gcd_all Man page Source code
getConsensusGeno Man page Source code
getMatchParents Man page Source code
get_markertype_combinations Man page Source code
homologue_lg_assignment Man page Source code
integrated.maplist Man page
leftstr Man page Source code
linkage Man page Source code
linterpol Man page Source code
makeProgeny Man page Source code
maplist_P1 Man page
maplist_P1_subset Man page
maplist_P2_subset Man page
marker_assignments_P1 Man page
marker_assignments_P2 Man page
marker_binning Man page Source code
marker_binning_list Man page Source code
marker_data_summary Man page Source code
merge_homologues Man page Source code
merge_marker_assignments Man page Source code
orient_and_merge_maps Man page Source code
overviewSNlinks Man page Source code
p4_1.0_1.0 Man page Source code
p4_1.0_1.1 Man page Source code
p4_1.0_1.2 Man page Source code
p4_1.0_1.3 Man page Source code
p4_1.0_2.0 Man page Source code
p4_1.0_2.1 Man page Source code
p4_1.0_2.2 Man page Source code
p4_1.1_1.1 Man page Source code
p4_1.1_1.2 Man page Source code
p4_1.1_1.3 Man page Source code
p4_1.1_2.2 Man page Source code
p4_1.2_1.2 Man page Source code
p4_1.2_2.1 Man page Source code
p4_1.2_2.2 Man page Source code
p4_1.3_1.2 Man page Source code
p4_1.3_1.3 Man page Source code
p4_1.3_2.1 Man page Source code
p4_1.3_2.2 Man page Source code
p4_2.0_1.1 Man page Source code
p4_2.0_1.2 Man page Source code
p4_2.0_1.3 Man page Source code
p4_2.0_2.0 Man page Source code
p4_2.0_2.1 Man page Source code
p4_2.0_2.2 Man page Source code
p4_2.1_2.2 Man page Source code
p4_2.2_2.2 Man page Source code
p4_functions Man page
p6_1.0_1.0 Man page Source code
parental_quantities Man page Source code
phase_SN_diploid Man page Source code
phased.maplist Man page
plot_SNlinks Man page Source code
plot_hom_vs_LG Man page Source code
plot_linkage_df Man page Source code
plot_map Man page Source code
plot_phased_maplist Man page Source code
polygamfrq Man page Source code
polymapR Man page
polymapR-package Man page
prepare_pwd Man page Source code
r3_0.1_0.1 Man page Source code
r3_0.1_1.1 Man page Source code
r3_0.1_2.1 Man page Source code
r3_1.0_1.0 Man page Source code
r3_1.0_1.1 Man page Source code
r3_1.0_2.0 Man page Source code
r3_1.0_2.1 Man page Source code
r3_1.1_1.1 Man page Source code
r3_1.1_2.1 Man page Source code
r3_2.0_1.1 Man page Source code
r3_2.0_2.0 Man page Source code
r3_2.0_2.1 Man page Source code
r3_2.1_2.1 Man page Source code
r3_functions Man page
r4_1.0_1.0 Man page Source code
r4_1.0_1.1 Man page Source code
r4_1.0_1.2 Man page Source code
r4_1.0_1.3 Man page Source code
r4_1.0_2.0 Man page Source code
r4_1.0_2.1 Man page Source code
r4_1.0_2.2 Man page Source code
r4_1.1_1.1 Man page Source code
r4_1.1_1.2 Man page Source code
r4_1.1_1.3 Man page Source code
r4_1.1_2.2 Man page Source code
r4_1.2_1.2 Man page Source code
r4_1.2_2.1 Man page Source code
r4_1.2_2.2 Man page Source code
r4_1.3_1.2 Man page Source code
r4_1.3_1.3 Man page Source code
r4_1.3_2.1 Man page Source code
r4_1.3_2.2 Man page Source code
r4_2.0_1.1 Man page Source code
r4_2.0_1.2 Man page Source code
r4_2.0_1.3 Man page Source code
r4_2.0_2.0 Man page Source code
r4_2.0_2.1 Man page Source code
r4_2.0_2.2 Source code
r4_2.1_2.1 Man page Source code
r4_2.1_2.2 Man page Source code
r4_2.2_2.2 Man page Source code
r4_functions Man page
r6_1.0_1.0 Man page Source code
r6_1.0_1.1 Man page Source code
r6_1.0_1.2 Man page Source code
r6_1.0_1.3 Man page Source code
r6_1.0_1.4 Man page Source code
r6_1.0_1.5 Man page Source code
r6_1.0_2.0 Man page Source code
r6_1.0_2.1 Man page Source code
r6_1.0_2.2 Man page Source code
r6_1.0_2.3 Man page Source code
r6_1.0_2.4 Man page Source code
r6_1.0_3.0 Man page Source code
r6_1.0_3.1 Man page Source code
r6_1.0_3.2 Man page Source code
r6_1.0_3.3 Man page Source code
r6_1.0_4.1 Man page Source code
r6_1.1_1.1 Man page Source code
r6_1.1_1.2 Man page Source code
r6_1.1_1.3 Man page Source code
r6_1.1_1.4 Man page Source code
r6_1.1_1.5 Man page Source code
r6_1.1_2.0 Man page Source code
r6_1.1_2.2 Man page Source code
r6_1.1_2.3 Man page Source code
r6_1.1_2.4 Man page Source code
r6_1.1_3.0 Man page Source code
r6_1.1_3.3 Man page Source code
r6_1.2_1.2 Man page Source code
r6_1.2_1.3 Man page Source code
r6_1.2_1.4 Man page Source code
r6_1.2_1.5 Man page Source code
r6_1.2_2.1 Man page Source code
r6_1.2_2.2 Man page Source code
r6_1.2_2.3 Man page Source code
r6_1.2_2.4 Man page Source code
r6_1.2_3.0 Man page Source code
r6_1.2_3.1 Man page Source code
r6_1.2_3.2 Man page Source code
r6_1.2_3.3 Man page Source code
r6_1.2_4.1 Man page Source code
r6_1.3_1.3 Man page Source code
r6_1.3_1.4 Man page Source code
r6_1.3_1.5 Man page Source code
r6_1.3_2.2 Man page Source code
r6_1.3_2.3 Man page Source code
r6_1.3_2.4 Man page Source code
r6_1.3_3.1 Man page Source code
r6_1.3_3.2 Man page Source code
r6_1.3_3.3 Man page Source code
r6_1.3_4.1 Man page Source code
r6_1.4_1.4 Man page Source code
r6_1.4_1.5 Man page Source code
r6_1.4_2.2 Man page Source code
r6_1.4_2.3 Man page Source code
r6_1.4_2.4 Man page Source code
r6_1.4_3.2 Man page Source code
r6_1.4_3.3 Man page Source code
r6_1.4_4.1 Man page Source code
r6_1.5_1.5 Man page Source code
r6_1.5_2.2 Man page Source code
r6_1.5_2.3 Man page Source code
r6_1.5_2.4 Man page Source code
r6_1.5_3.2 Man page Source code
r6_1.5_3.3 Man page Source code
r6_2.0_1.2 Man page Source code
r6_2.0_1.3 Man page Source code
r6_2.0_1.4 Man page Source code
r6_2.0_1.5 Man page Source code
r6_2.0_2.0 Man page Source code
r6_2.0_2.1 Man page Source code
r6_2.0_2.2 Man page Source code
r6_2.0_2.3 Man page Source code
r6_2.0_2.4 Man page Source code
r6_2.0_3.0 Man page Source code
r6_2.0_3.1 Man page Source code
r6_2.0_3.2 Man page Source code
r6_2.0_3.3 Man page Source code
r6_2.0_4.1 Man page Source code
r6_2.1_1.5 Man page Source code
r6_2.1_2.4 Man page Source code
r6_2.1_3.0 Man page Source code
r6_2.2_2.2 Man page Source code
r6_2.2_2.3 Man page Source code
r6_2.2_2.4 Man page Source code
r6_2.2_3.2 Man page Source code
r6_2.2_3.3 Man page Source code
r6_2.3_2.3 Man page Source code
r6_2.3_2.4 Man page Source code
r6_2.3_3.2 Man page Source code
r6_2.3_3.3 Man page Source code
r6_2.4_2.4 Man page Source code
r6_3.0_1.3 Man page Source code
r6_3.0_1.4 Man page Source code
r6_3.0_1.5 Man page Source code
r6_3.0_2.2 Man page Source code
r6_3.0_2.3 Man page Source code
r6_3.0_2.4 Man page Source code
r6_3.0_3.0 Man page Source code
r6_3.0_3.1 Man page Source code
r6_3.0_3.2 Man page Source code
r6_3.0_3.3 Man page Source code
r6_3.0_4.1 Man page Source code
r6_3.3_2.4 Man page Source code
r6_3.3_3.3 Man page Source code
r6_functions Man page
r_LOD_plot Man page Source code
rightstr Man page Source code
screen_for_NA_values Man page Source code
screen_for_duplicate_individuals Man page Source code
screen_for_duplicate_markers Man page Source code
screened_data Man page
screened_data2 Man page
screened_data3 Man page
segregating_data Man page
segtypeInfoSummary Man page Source code
selSegtypeInfo Man page Source code
split_linkage_info Man page Source code
test_LG_hom_stack Man page Source code
test_cluster_stack Man page Source code
test_dosage_matrix Man page Source code
test_linkage_df Man page Source code
test_prefpairing Man page Source code
vector.to.matrix Man page Source code
write.TSNPM Man page Source code
write.logheader Man page Source code
write.mct Man page Source code
write.pwd Man page Source code
write_nested_list Man page Source code
write_pwd_list Man page Source code
polymapR documentation built on Aug. 24, 2018, 5:04 p.m.