API for polymapR
Linkage Analysis in Outcrossing Polyploids

Global functions
ALL_dosages Man page
LGHomDf_P1_1 Man page
LGHomDf_P2_1 Man page
LGHomDf_P2_2 Man page
MDSMap_from_list Man page Source code
Mode Man page Source code
P1_DxN_Assigned Man page
P1_SxS_Assigned Man page
P1_homologues Man page
P2_DxN_Assigned Man page
P2_SxS_Assigned Man page
P2_SxS_Assigned_2 Man page
P2_homologues Man page
P2_homologues_triploid Man page
PCA_progeny Man page Source code
SNSN_LOD_deviations Man page Source code
SN_DN_P1 Man page
SN_DN_P2 Man page
SN_SN_P1 Man page
SN_SN_P2 Man page
SN_SN_P2_triploid Man page
SN_SS_P1 Man page
SN_SS_P2 Man page
TRI_dosages Man page
add_dup_markers Man page Source code
all_linkages_list_P1 Man page
all_linkages_list_P1_split Man page
all_linkages_list_P1_subset Man page
assembleDuplexLinks Man page
assign_SN_SN Man page Source code
assign_linkage_group Man page Source code
bridgeHomologues Man page Source code
calcPotShifts Man page Source code
calcSegtypeInfo Man page Source code
calc_binning_thresholds Man page Source code
calc_q1 Man page Source code
calc_q2 Man page Source code
calc_q3 Man page Source code
calc_qall Man page Source code
checkF1 Man page Source code
checkFilename Man page Source code
check_map Man page Source code
check_marker_assignment Man page Source code
chk2integer Man page Source code
cluster_SN_markers Man page Source code
cluster_per_LG Man page Source code
consensus_LG_assignment Man page Source code
consensus_LG_names Man page Source code
convert_marker_dosages Man page Source code
correctDosages Man page Source code
createChmHomList Man page Source code
createMap Man page Source code
createTetraOriginInput Man page Source code
create_phased_maplist Man page Source code
define_LG_structure Man page Source code
digamfrq Man page Source code
finish_linkage_analysis Man page Source code
gcd Man page Source code
gcd_all Man page Source code
getConsensusGeno Man page Source code
getMatchParents Man page Source code
get_markertype_combinations Man page Source code
homologue_lg_assignment Man page Source code
integrated.maplist Man page
leftstr Man page Source code
linkage Man page Source code
linterpol Man page Source code
makeProgeny Man page Source code
maplist_P1 Man page
maplist_P1_subset Man page
maplist_P2_subset Man page
marker_assignments_P1 Man page
marker_assignments_P2 Man page
marker_binning Man page Source code
marker_binning_list Man page Source code
marker_data_summary Man page Source code
merge_homologues Man page Source code
merge_marker_assignments Man page Source code
orient_and_merge_maps Man page Source code
overviewSNlinks Man page Source code
p4_1.0_1.0 Man page Source code
p4_1.0_1.1 Man page Source code
p4_1.0_1.2 Man page Source code
p4_1.0_1.3 Man page Source code
p4_1.0_2.0 Man page Source code
p4_1.0_2.1 Man page Source code
p4_1.0_2.2 Man page Source code
p4_1.1_1.1 Man page Source code
p4_1.1_1.2 Man page Source code
p4_1.1_1.3 Man page Source code
p4_1.1_2.2 Man page Source code
p4_1.2_1.2 Man page Source code
p4_1.2_2.1 Man page Source code
p4_1.2_2.2 Man page Source code
p4_1.3_1.2 Man page Source code
p4_1.3_1.3 Man page Source code
p4_1.3_2.1 Man page Source code
p4_1.3_2.2 Man page Source code
p4_2.0_1.1 Man page Source code
p4_2.0_1.2 Man page Source code
p4_2.0_1.3 Man page Source code
p4_2.0_2.0 Man page Source code
p4_2.0_2.1 Man page Source code
p4_2.0_2.2 Man page Source code
p4_2.1_2.2 Man page Source code
p4_2.2_2.2 Man page Source code
p4_functions Man page
p6_1.0_1.0 Man page Source code
parental_quantities Man page Source code
phase_SN_diploid Man page Source code
phased.maplist Man page
plot_SNlinks Man page Source code
plot_hom_vs_LG Man page Source code
plot_linkage_df Man page Source code
plot_map Man page Source code
plot_phased_maplist Man page Source code
polygamfrq Man page Source code
polymapR Man page
polymapR-package Man page
prepare_pwd Man page Source code
r3_0.1_0.1 Man page Source code
r3_0.1_1.1 Man page Source code
r3_0.1_2.1 Man page Source code
r3_1.0_1.0 Man page Source code
r3_1.0_1.1 Man page Source code
r3_1.0_2.0 Man page Source code
r3_1.0_2.1 Man page Source code
r3_1.1_1.1 Man page Source code
r3_1.1_2.1 Man page Source code
r3_2.0_1.1 Man page Source code
r3_2.0_2.0 Man page Source code
r3_2.0_2.1 Man page Source code
r3_2.1_2.1 Man page Source code
r3_functions Man page
r4_1.0_1.0 Man page Source code
r4_1.0_1.1 Man page Source code
r4_1.0_1.2 Man page Source code
r4_1.0_1.3 Man page Source code
r4_1.0_2.0 Man page Source code
r4_1.0_2.1 Man page Source code
r4_1.0_2.2 Man page Source code
r4_1.1_1.1 Man page Source code
r4_1.1_1.2 Man page Source code
r4_1.1_1.3 Man page Source code
r4_1.1_2.2 Man page Source code
r4_1.2_1.2 Man page Source code
r4_1.2_2.1 Man page Source code
r4_1.2_2.2 Man page Source code
r4_1.3_1.2 Man page Source code
r4_1.3_1.3 Man page Source code
r4_1.3_2.1 Man page Source code
r4_1.3_2.2 Man page Source code
r4_2.0_1.1 Man page Source code
r4_2.0_1.2 Man page Source code
r4_2.0_1.3 Man page Source code
r4_2.0_2.0 Man page Source code
r4_2.0_2.1 Man page Source code
r4_2.0_2.2 Source code
r4_2.1_2.1 Man page Source code
r4_2.1_2.2 Man page Source code
r4_2.2_2.2 Man page Source code
r4_functions Man page
r6_1.0_1.0 Man page Source code
r6_1.0_1.1 Man page Source code
r6_1.0_1.2 Man page Source code
r6_1.0_1.3 Man page Source code
r6_1.0_1.4 Man page Source code
r6_1.0_1.5 Man page Source code
r6_1.0_2.0 Man page Source code
r6_1.0_2.1 Man page Source code
r6_1.0_2.2 Man page Source code
r6_1.0_2.3 Man page Source code
r6_1.0_2.4 Man page Source code
r6_1.0_3.0 Man page Source code
r6_1.0_3.1 Man page Source code
r6_1.0_3.2 Man page Source code
r6_1.0_3.3 Man page Source code
r6_1.0_4.1 Man page Source code
r6_1.1_1.1 Man page Source code
r6_1.1_1.2 Man page Source code
r6_1.1_1.3 Man page Source code
r6_1.1_1.4 Man page Source code
r6_1.1_1.5 Man page Source code
r6_1.1_2.0 Man page Source code
r6_1.1_2.2 Man page Source code
r6_1.1_2.3 Man page Source code
r6_1.1_2.4 Man page Source code
r6_1.1_3.0 Man page Source code
r6_1.1_3.3 Man page Source code
r6_1.2_1.2 Man page Source code
r6_1.2_1.3 Man page Source code
r6_1.2_1.4 Man page Source code
r6_1.2_1.5 Man page Source code
r6_1.2_2.1 Man page Source code
r6_1.2_2.2 Man page Source code
r6_1.2_2.3 Man page Source code
r6_1.2_2.4 Man page Source code
r6_1.2_3.0 Man page Source code
r6_1.2_3.1 Man page Source code
r6_1.2_3.2 Man page Source code
r6_1.2_3.3 Man page Source code
r6_1.2_4.1 Man page Source code
r6_1.3_1.3 Man page Source code
r6_1.3_1.4 Man page Source code
r6_1.3_1.5 Man page Source code
r6_1.3_2.2 Man page Source code
r6_1.3_2.3 Man page Source code
r6_1.3_2.4 Man page Source code
r6_1.3_3.1 Man page Source code
r6_1.3_3.2 Man page Source code
r6_1.3_3.3 Man page Source code
r6_1.3_4.1 Man page Source code
r6_1.4_1.4 Man page Source code
r6_1.4_1.5 Man page Source code
r6_1.4_2.2 Man page Source code
r6_1.4_2.3 Man page Source code
r6_1.4_2.4 Man page Source code
r6_1.4_3.2 Man page Source code
r6_1.4_3.3 Man page Source code
r6_1.4_4.1 Man page Source code
r6_1.5_1.5 Man page Source code
r6_1.5_2.2 Man page Source code
r6_1.5_2.3 Man page Source code
r6_1.5_2.4 Man page Source code
r6_1.5_3.2 Man page Source code
r6_1.5_3.3 Man page Source code
r6_2.0_1.2 Man page Source code
r6_2.0_1.3 Man page Source code
r6_2.0_1.4 Man page Source code
r6_2.0_1.5 Man page Source code
r6_2.0_2.0 Man page Source code
r6_2.0_2.1 Man page Source code
r6_2.0_2.2 Man page Source code
r6_2.0_2.3 Man page Source code
r6_2.0_2.4 Man page Source code
r6_2.0_3.0 Man page Source code
r6_2.0_3.1 Man page Source code
r6_2.0_3.2 Man page Source code
r6_2.0_3.3 Man page Source code
r6_2.0_4.1 Man page Source code
r6_2.1_1.5 Man page Source code
r6_2.1_2.4 Man page Source code
r6_2.1_3.0 Man page Source code
r6_2.2_2.2 Man page Source code
r6_2.2_2.3 Man page Source code
r6_2.2_2.4 Man page Source code
r6_2.2_3.2 Man page Source code
r6_2.2_3.3 Man page Source code
r6_2.3_2.3 Man page Source code
r6_2.3_2.4 Man page Source code
r6_2.3_3.2 Man page Source code
r6_2.3_3.3 Man page Source code
r6_2.4_2.4 Man page Source code
r6_3.0_1.3 Man page Source code
r6_3.0_1.4 Man page Source code
r6_3.0_1.5 Man page Source code
r6_3.0_2.2 Man page Source code
r6_3.0_2.3 Man page Source code
r6_3.0_2.4 Man page Source code
r6_3.0_3.0 Man page Source code
r6_3.0_3.1 Man page Source code
r6_3.0_3.2 Man page Source code
r6_3.0_3.3 Man page Source code
r6_3.0_4.1 Man page Source code
r6_3.3_2.4 Man page Source code
r6_3.3_3.3 Man page Source code
r6_functions Man page
r_LOD_plot Man page Source code
rightstr Man page Source code
screen_for_NA_values Man page Source code
screen_for_duplicate_individuals Man page Source code
screen_for_duplicate_markers Man page Source code
screened_data Man page
screened_data2 Man page
screened_data3 Man page
segregating_data Man page
segtypeInfoSummary Man page Source code
selSegtypeInfo Man page Source code
split_linkage_info Man page Source code
test_LG_hom_stack Man page Source code
test_cluster_stack Man page Source code
test_dosage_matrix Man page Source code
test_linkage_df Man page Source code
test_prefpairing Man page Source code
vector.to.matrix Man page Source code
write.logheader Man page Source code
write.mct Man page Source code
write.pwd Man page Source code
write_nested_list Man page Source code
write_pwd_list Man page Source code
polymapR documentation built on Dec. 14, 2017, 5:29 p.m.