plot_phased_maplist: Visualise the phased homologue maplist

In polymapR: Linkage Analysis in Outcrossing Polyploids

Visualise the phased homologue maplist

Description

plot_phased_maplist is a function for visualising a phased maplist, the output of create_phased_maplist

Usage

plot_phased_maplist(
  phased.maplist,
  ploidy,
  ploidy2 = NULL,
  cols = c("black", "darkred", "navyblue"),
  width = 0.2,
  mapTitles = NULL
)

Arguments

phased.maplist	A list of phased linkage maps, the output of create_phased_maplist
ploidy	Integer. Ploidy of the organism.
ploidy2	Optional integer, by default NULL. Ploidy of parent 2, if different from parent 1.
cols	Vector of colours for the integrated, parent1 and parent2 maps, respectively.
width	Width of the linkage maps, by default 0.2
mapTitles	Optional vector of titles for maps, by default names of maplist, or titles LG1, LG2 etc. are used.

Examples

data("phased.maplist")
plot_phased_maplist(phased.maplist, ploidy = 4)

polymapR documentation built on Nov. 5, 2023, 1:09 a.m.