convert_polyRAD: Convert (probabilistic) genotype calling results from polyRAD...
In polymapR: Linkage Analysis in Outcrossing Polyploids
View source: R/exported_functions.R
convert_polyRAD R Documentation
Convert (probabilistic) genotype calling results from polyRAD to input compatible with polymapR
Description
Convert (probabilistic) genotype calling results from polyRAD to input compatible with polymapR
Usage
convert_polyRAD(RADdata)
Arguments
RADdata
An RADdata (S3 class) object; output of the function PipelineMapping2Parents having followed
the prior steps needed in the polyRAD pipeline. See the polyRAD vignette for details.
Value
A data frame which include columns:
MarkerName, SampleName,P0 ~ Pploidy (e.g. P0 ~ P4 for tetraploid, which represents
the probability assigning to this dosage), maxgeno (the most likely dosage),
and maxP (the maximum probability)
Examples
data("exampleRAD_mapping")
convert_polyRAD(RADdata = exampleRAD_mapping)
polymapR documentation built on Nov. 5, 2023, 1:09 a.m.
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View source: R/exported_functions.R
| convert_polyRAD | R Documentation |
Convert (probabilistic) genotype calling results from polyRAD to input compatible with polymapR
Description
Convert (probabilistic) genotype calling results from polyRAD to input compatible with polymapR
Usage
convert_polyRAD(RADdata)
Arguments
RADdata |
An RADdata (S3 class) object; output of the function PipelineMapping2Parents having followed the prior steps needed in the polyRAD pipeline. See the polyRAD vignette for details. |
Value
A data frame which include columns: MarkerName, SampleName,P0 ~ Pploidy (e.g. P0 ~ P4 for tetraploid, which represents the probability assigning to this dosage), maxgeno (the most likely dosage), and maxP (the maximum probability)
Examples
data("exampleRAD_mapping")
convert_polyRAD(RADdata = exampleRAD_mapping)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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