write.mct: Write MapChart file

In polymapR: Linkage Analysis in Outcrossing Polyploids

Write MapChart file

Description

Write a .mct file of a maplist for external plotting with MapChart software (Voorrips ).

Usage

write.mct(
  maplist,
  mapdir = "mapping_files_MDSMap",
  file_info = paste("; MapChart file created on", Sys.Date()),
  filename = "MapFile",
  precision = 2,
  showMarkerNames = FALSE
)

Arguments

maplist	A list of maps. In the first column marker names and in the second their position. All map data are compiled into a single MapChart file.
mapdir	Directory to which .mct files are written, by default the same directory as for MDSMap_from_list
file_info	A character string added to the first lines of the .mct file, by default a datestamp is recorded.
filename	Character string of filename to write the .mct file to, by default "MapFile"
precision	To how many decimal places should marker positions be specified (default = 2)?
showMarkerNames	Logical, by default FALSE, if TRUE, the marker names will be diplayed in the MapChart output as well.

Examples

## Not run: 
data("integrated.maplist")
write.mct(integrated.maplist)
## End(Not run)

polymapR documentation built on Nov. 5, 2023, 1:09 a.m.