plot_linkage_df: Plot r versus LOD grouped by phase

In polymapR: Linkage Analysis in Outcrossing Polyploids

Plot r versus LOD grouped by phase

Description

plot_linkage_df plots r versus LOD, colour separated for different phases.

Usage

plot_linkage_df(
  linkage_df,
  r_max = 0.5,
  stepsize = 0.001,
  add_legend = TRUE,
  ...
)

Arguments

linkage_df	A linkage data.frame as output of linkage.
r_max	Maximum r value to plot
stepsize	Size of window in recombination frequency to generate mean LOD score. Larger values will reduce plot density.
add_legend	Logical, should a legend be added to the plot?
...	Arguments passed to base plot function

Examples

data("SN_SN_P1")
plot_linkage_df(SN_SN_P1)

polymapR documentation built on Nov. 5, 2023, 1:09 a.m.