plot: pomp plotting facilities

Description Usage Arguments

Description

Diagnostic plots.

Usage

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## S4 method for signature 'pomp_plottable'
plot(
  x,
  variables,
  panel = lines,
  nc = NULL,
  yax.flip = FALSE,
  mar = c(0, 5.1, 0, if (yax.flip) 5.1 else 2.1),
  oma = c(6, 0, 5, 0),
  axes = TRUE,
  ...
)

## S4 method for signature 'Pmcmc'
plot(x, ..., pars)

## S4 method for signature 'Abc'
plot(x, ..., pars, scatter = FALSE)

## S4 method for signature 'Mif2'
plot(x, ..., pars, transform = FALSE)

## S4 method for signature 'probed_pomp'
plot(x, y, ...)

## S4 method for signature 'spectd_pomp'
plot(
  x,
  ...,
  max.plots.per.page = 4,
  plot.data = TRUE,
  quantiles = c(0.025, 0.25, 0.5, 0.75, 0.975),
  quantile.styles = list(lwd = 1, lty = 1, col = "gray70"),
  data.styles = list(lwd = 2, lty = 2, col = "black")
)

## S4 method for signature 'bsmcd_pomp'
plot(x, pars, thin, ...)

## S4 method for signature 'probe_match_objfun'
plot(x, y, ...)

## S4 method for signature 'spect_match_objfun'
plot(x, y, ...)

Arguments

x

the object to plot

variables

optional character; names of variables to be displayed

panel

function of prototype panel(x, col, bg, pch, type, ...) which gives the action to be carried out in each panel of the display.

nc

the number of columns to use. Defaults to 1 for up to 4 series, otherwise to 2.

yax.flip

logical; if TRUE, the y-axis (ticks and numbering) should flip from side 2 (left) to 4 (right) from series to series.

mar, oma

the par mar and oma settings. Modify with care!

axes

logical; indicates if x- and y- axes should be drawn

...

ignored or passed to low-level plotting functions

pars

names of parameters.

scatter

logical; if FALSE, traces of the parameters named in pars will be plotted against ABC iteration number. If TRUE, the traces will be displayed or as a scatterplot.

transform

logical; should the parameter be transformed onto the estimation scale?

y

ignored

max.plots.per.page

positive integer; maximum number of plots on a page

plot.data

logical; should the data spectrum be included?

quantiles

numeric; quantiles to display

quantile.styles

list; plot styles to use for quantiles

data.styles

list; plot styles to use for data

thin

integer; when the number of samples is very large, it can be helpful to plot a random subsample: thin specifies the size of this subsample.


pomp documentation built on May 13, 2021, 5:09 p.m.