plot: pomp plotting facilities In pomp: Statistical Inference for Partially Observed Markov Processes

Description

Diagnostic plots.

Usage

 ``` 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44``` ```## S4 method for signature 'pomp_plottable' plot( x, variables, panel = lines, nc = NULL, yax.flip = FALSE, mar = c(0, 5.1, 0, if (yax.flip) 5.1 else 2.1), oma = c(6, 0, 5, 0), axes = TRUE, ... ) ## S4 method for signature 'Pmcmc' plot(x, ..., pars) ## S4 method for signature 'Abc' plot(x, ..., pars, scatter = FALSE) ## S4 method for signature 'Mif2' plot(x, ..., pars, transform = FALSE) ## S4 method for signature 'probed_pomp' plot(x, y, ...) ## S4 method for signature 'spectd_pomp' plot( x, ..., max.plots.per.page = 4, plot.data = TRUE, quantiles = c(0.025, 0.25, 0.5, 0.75, 0.975), quantile.styles = list(lwd = 1, lty = 1, col = "gray70"), data.styles = list(lwd = 2, lty = 2, col = "black") ) ## S4 method for signature 'bsmcd_pomp' plot(x, pars, thin, ...) ## S4 method for signature 'probe_match_objfun' plot(x, y, ...) ## S4 method for signature 'spect_match_objfun' plot(x, y, ...) ```

Arguments

 `x` the object to plot `variables` optional character; names of variables to be displayed `panel` function of prototype `panel(x, col, bg, pch, type, ...)` which gives the action to be carried out in each panel of the display. `nc` the number of columns to use. Defaults to 1 for up to 4 series, otherwise to 2. `yax.flip` logical; if TRUE, the y-axis (ticks and numbering) should flip from side 2 (left) to 4 (right) from series to series. `mar, oma` the `par` `mar` and `oma` settings. Modify with care! `axes` logical; indicates if x- and y- axes should be drawn `...` ignored or passed to low-level plotting functions `pars` names of parameters. `scatter` logical; if `FALSE`, traces of the parameters named in `pars` will be plotted against ABC iteration number. If `TRUE`, the traces will be displayed or as a scatterplot. `transform` logical; should the parameter be transformed onto the estimation scale? `y` ignored `max.plots.per.page` positive integer; maximum number of plots on a page `plot.data` logical; should the data spectrum be included? `quantiles` numeric; quantiles to display `quantile.styles` list; plot styles to use for quantiles `data.styles` list; plot styles to use for data `thin` integer; when the number of samples is very large, it can be helpful to plot a random subsample: `thin` specifies the size of this subsample.

pomp documentation built on May 13, 2021, 5:09 p.m.