Files in pooledpeaks
Genetic Analysis of Pooled Samples
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/Pop_Gen_Functions.R
R/Clustering.R
R/batch_version.R
R/score_marker_wrap.R
R/associate_dyes.R
R/Replicate_check.R
R/pooledpeaks-package.R
R/Pop_Gen_setup.R
R/batch_import.R
R/lf_to_tdf.R
inst/paper.html
inst/CONTRIBUTING.md
inst/paper.md
inst/CODE_OF_CONDUCT.md
inst/pooledpeaks_paper.bib
inst/doc/workflow.Rmd
inst/doc/workflow.html
inst/doc/workflow.R
inst/extdata/33.1a_I_C01_2012-07-18.fsa
inst/extdata/Multiplex_set_I_Shaem.4a_3_Sample_20221028_215634.fsa
inst/extdata/Multiplex_set_I_Shaem.1a_1_Sample_20221028_215632.fsa
inst/extdata/23.2b_I_A07_2012-07-18.fsa
inst/extdata/30.3a_I_B01_2012-07-18.fsa
inst/extdata/30.3b_I_B07_2012-07-18.fsa
inst/extdata/Multiplex_set_I_Shaem.3b_2_Sample_20221028_232302.fsa
inst/extdata/Multiplex_set_I_Shaem.4b_3_Sample_20221028_232303.fsa
inst/extdata/33.1b_I_C07_2012-07-18.fsa
inst/extdata/Multiplex_set_I_Shaem.3a_2_Sample_20221028_215633.fsa
inst/extdata/Multiplex_set_I_Shaem.1b_1_Sample_20221028_232301.fsa
inst/extdata/23.2a_I_A01_2012-07-18.fsa
inst/extdata/Multiplex_frequencies.txt
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-Replicate_check.R
tests/testthat/test-batch_version.R
tests/testthat/test-lf_to_tdf.R
tests/testthat/test-score_marker_wrap.R
tests/testthat/test-Pop_Gen_setup.R
tests/testthat/test-Pop_Gen_Functions.R
tests/testthat/test-Clustering.R
tests/testthat/test-batch_import.R
tests/testthat/test-associate_dyes.R
vignettes/workflow.Rmd
vignettes/scores_SMMS2_tdfex.txt
vignettes/scores_SMMS2_lfex.txt
vignettes/combined3.txt
man/data_manipulation.Rd
man/TwoLevelGST.Rd
man/TypedLoci.Rd
man/check_fsa_v_batch.Rd
man/AlRich.Rd
man/cluster.Rd
man/GeneticDistanceMatrix.Rd
man/PCDM.Rd
man/score_markers_rev3.Rd
man/fsa_batch_imp.Rd
man/MDSplot.Rd
man/JostD_KK.Rd
man/lf_to_tdf.Rd
man/Rep_check.Rd
man/GeneIdentityMatrix.Rd
man/JostD.Rd
man/GST.Rd
man/RWCDistanceMatrix.Rd
man/associate_dyes.Rd
man/SampleOfLoci.Rd
man/DistCor.Rd
man/clean_scores.Rd
man/preGST.Rd
man/BootStrap3.Rd
man/fsa_metadata.Rd
man/preJostD.Rd
man/LoadData.Rd
man/ClusterFromSamples.Rd
man/pooledpeaks-package.Rd
man/EmpiricalSE.Rd
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-maturing.svg
