genclone-method: Methods used for the genclone object

In poppr: Genetic Analysis of Populations with Mixed Reproduction

Methods used for the genclone object

Description

Default methods for subsetting genclone objects.

Usage

## S4 method for signature 'genclone'
initialize(.Object, ..., mlg, mlgclass = TRUE)

## S4 method for signature 'genclone,ANY,ANY,ANY'
x[i, j, ..., mlg.reset = FALSE, drop = FALSE]

## S4 method for signature 'genclone'
show(object)

## S4 method for signature 'genclone'
print(x, ..., fullnames = TRUE)

Arguments

.Object	a character, "genclone"
...	passed on to the genind object.
mlg	a vector where each element assigns the multilocus genotype of that individual in the data set.
mlgclass	a logical value specifying whether or not to translate the mlg object into an MLG class object.
x	a genclone object
i	vector of numerics indicating number of individuals desired
j	a vector of numerics corresponding to the loci desired.
mlg.reset	logical. Defaults to FALSE. If TRUE, the mlg vector will be reset
drop	set to FALSE
object	a genclone object
fullnames	logical. If TRUE, then the full names of the populations will be printed. If FALSE, then only the first and last three population names are displayed.
gen	"genind" object
loc	passed on to genind object.
treatOther	passed on to genind object.
quiet	passed on to genind object.

Author(s)

Zhian N. Kamvar

poppr documentation built on March 31, 2023, 7:15 p.m.