mll.custom: Define custom multilocus lineages
In poppr: Genetic Analysis of Populations with Mixed Reproduction

Description Usage Arguments Value Author(s) See Also Examples

This function will allow you to define custom multilocus lineages for your data set.

mll.custom(x, set = TRUE, value)

mll.custom(x, set = TRUE) <- value

mll.levels(x, set = TRUE, value)

mll.levels(x, set = TRUE) <- value

`x`	a genclone or snpclone object.
`set`	logical. If `TRUE` (default), the visible mlls will be set to 'custom'.
`value`	a vector that defines the multilocus lineages for your data. This can be a vector of ANYTHING that can be turned into a factor.

an object of the same type as x

Zhian N. Kamvar

mll mlg.table

data(partial_clone)
pc <- as.genclone(partial_clone)
mll.custom(pc) <- LETTERS[mll(pc)]
mll(pc)

# Let's say we had a mistake and the A mlg was actually B. 
mll.levels(pc)[mll.levels(pc) == "A"] <- "B"
mll(pc)

# Set the MLL back to the original definition.
mll(pc) <- "original"
mll(pc)