Man pages for prewas
Data Pre-Processing for Bacterial Genome-Wide Association Studies
| collapse_snps_into_genes | Collapse SNPs into the gene(s) which they are from |
| collapse_snps_into_genes_by_impact | Collapse SNPs into the gene(s) which they are from and by... |
| gff | GFF3 file for example genomes |
| outgroup | Name of outgroup in the phylogenetic tree. |
| prewas | Preprocess SNPs before bGWAS |
| results | Results from running prewas() on the example data. |
| snpeff_vcf | Nucleotide variants in example genome samples with snpeff... |
| tree | Phylogenetic tree of example genomes |
| vcf | Nucleotide variants in example genome samples |
