Files in prewas

Data Pre-Processing for Bacterial Genome-Wide Association Studies

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/reference_alleles.R R/split_multiallelic_snps.R R/collapse_snps_by_gene.R R/data.R R/dup_snps_in_overlapping_genes.R R/format_inputs.R R/prewas.R R/validate.R R/preprocess_tree_and_vcf.R R/generate_allele_matrix.R

inst/CITATION

inst/doc/getting_started_with_prewas.html

inst/doc/getting_started_with_prewas.Rmd inst/doc/getting_started_with_prewas.R

build/vignette.rds

tests/testthat.R tests/testthat/test-preprocess_tree_and_vcf.R tests/testthat/test-validate.R tests/testthat/test-prewas.R tests/testthat/test-format_inputs.R tests/testthat/test-generate_allele_matrix.R tests/testthat/test-split_multiallelic_snps.R tests/testthat/test-collapse_snps_by_gene.R tests/testthat/test-reference_alleles.R tests/testthat/test-dup_snps_in_overlapping_genes.R

vignettes/Figure_S3.png

vignettes/getting_started_with_prewas.Rmd

vignettes/Figure_1.png

vignettes/Figure_S1.png

data/vcf.rda

data/results.rda

data/tree.rda

data/gff.rda

data/outgroup.rda

data/snpeff_vcf.rda

man/gff.Rd man/tree.Rd man/vcf.Rd man/collapse_snps_into_genes.Rd man/collapse_snps_into_genes_by_impact.Rd man/snpeff_vcf.Rd man/outgroup.Rd man/results.Rd man/prewas.Rd

prewas documentation built on April 2, 2021, 5:06 p.m.