collapse_snps_into_genes_by_impact: Collapse SNPs into the gene(s) which they are from and by...

In prewas: Data Pre-Processing for Bacterial Genome-Wide Association Studies

Description

Collapse SNPs into the gene(s) which they are from and by snpeff impcat

Usage

collapse_snps_into_genes_by_impact(
  bin_mat,
  gene_vec,
  predicted_impact,
  snpeff_grouping
)

Arguments

bin_mat	Matrix.
gene_vec	Character. Vector of gene names.
predicted_impact	Character. Vector of predicted functional impacts.
snpeff_grouping	Character. Vector or single string of impacts of interest.

Value

a list of gene_mats, collapsed by gene and snpeff impact

prewas documentation built on April 2, 2021, 5:06 p.m.