Man pages for prewas
Data Pre-Processing for Bacterial Genome-Wide Association Studies

collapse_snps_into_genesCollapse SNPs into the gene(s) which they are from
collapse_snps_into_genes_by_impactCollapse SNPs into the gene(s) which they are from and by...
gffGFF3 file for example genomes
outgroupName of outgroup in the phylogenetic tree.
prewasPreprocess SNPs before bGWAS
resultsResults from running prewas() on the example data.
snpeff_vcfNucleotide variants in example genome samples with snpeff...
treePhylogenetic tree of example genomes
vcfNucleotide variants in example genome samples
prewas documentation built on April 2, 2021, 5:06 p.m.