|collapse_snps_into_genes||Collapse SNPs into the gene(s) which they are from|
|collapse_snps_into_genes_by_impact||Collapse SNPs into the gene(s) which they are from and by...|
|gff||GFF3 file for example genomes|
|outgroup||Name of outgroup in the phylogenetic tree.|
|prewas||Preprocess SNPs before bGWAS|
|results||Results from running prewas() on the example data.|
|snpeff_vcf||Nucleotide variants in example genome samples with snpeff...|
|tree||Phylogenetic tree of example genomes|
|vcf||Nucleotide variants in example genome samples|
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