calculateFDR: Calculate FDR Cutoffs

Description Usage Arguments

View source: R/9-deprecated.R

Description

This function uses the result of a permuteTheta call to calculate false discovery rate (FDR) cutoffs.

Usage

1
calculateFDR(theta, ptheta, cutoff = seq(0.6, 0.9, 0.1))

Arguments

theta

A data.frame. The result of a calculateTheta call.

ptheta

A data.frame. The result of a permuteTheta call.

cutoff

For updateCutoffs, a numeric vector. this argument provides the FDR cutoffs to test. For graph functions, a numeric scalar. This argument indicates the maximum theta to include in the figure. For graph functions, a large integer will instead retrieve the top N pairs as ranked by theta.


propr documentation built on Dec. 16, 2019, 9:30 a.m.