Man pages for propr
Calculating Proportionality Between Vectors of Compositional Data

abstractAbstract Two propr Objects
aldex2proprImport 'ALDEx2' Object
aldex.corCorrelate CLR with a Continuous Measurement
alphaThetaCalculate alpha Theta
alphaTheta_oldCalculate alpha Theta
alphaThetaW_oldCalculate Weighted Theta
calculateFDRCalculate FDR Cutoffs
calculateFDR_oldCalculate FDR Cutoffs
calculateThetaCalculate Theta
calculateTheta_oldCalculate Theta
calculateThetaW_oldCalculate Weighted Theta
caneToad.countsExample Cane Toad Count Data
caneToad.groupsExample Cane Toad Group Data
dendroCheckDendrogram Plot Check
differentialCheckDifferential Proportionality Check
ggdendDendrogram Plot Wrapper
ivar2indexBuild Index from ivar Argument
lr2corCorrelate CLR with a Continuous Measurement
mailMock Mail Count Data
marg.absExample Absolute mRNA
migraph'igraph' Helper Functions
multiplotPlot Multiple Graphs
packageCheckPackage Check
palsCalculate PALs for Pairs
pd.dExample propd Object
pd.eExample propd Object
permuteThetaPermute Theta
permuteTheta_falsePermute Theta
permuteTheta_naivePermute Theta
permuteTheta_oldPermute Theta
permuteTheta_primePermute Theta
plotCheckPlot Check
progressMake Progress Bar
promptCheckFeature Check
prop2probCalculate Probability from Proportionality
propdThe propd Method
proportionalityCalculate Proportionality
proprThe propr Package
proprALRCalculates the additive log-ratio transformation.
proprCLRCalculates the centered log-ratio transformation.
proprPairsRecasts proportionality matrix as a table of feature pairs.
proprPerbCalculate proportionality metric rho (Erb 2016).
proprPhitCalculate proportionality metric phi (Lovell 2015).
proprSymSymmetrizes a proportionality matrix.
proprTriRetrieve the lower left triangle of a proportionality matrix.
proprVLRCalculates the variance of the log of the ratios.
ratiosRecast Matrix as Feature Ratios
top.countsExample propr Object
top.lrExample propr Object
visualizeVisualize Proportionality
propr documentation built on March 22, 2018, 1:04 a.m.