slate: Build 'propr' Results Table

In propr: Calculating Proportionality Between Vectors of Compositional Data

Description

Builds a table of VLR, VLS, and proportionality for each feature pair in a propr object. If the argument k is provided, the table will also include co-cluster membership. Returns a data.frame of all pairwise relationships. If the argument k is provided, returns a list of the data.frame of pairwise relationships and the cluster membership.

Usage

slate(rho, k, prompt = TRUE, plotly = FALSE)

Arguments

rho	A propr or propd object.
k	An integer. For propr methods, the number of co-clusters (where all pairs receive a specified color if and only if both members belong to same the cluster). For propd methods, the maximum number of PALs to index when calculating pals in the network.
prompt	A logical scalar. Set to FALSE to disable the courtesy prompt when working with big data.
plotly	A logical scalar. Set to TRUE to produce a dynamic plot using the plotly package.

propr documentation built on Dec. 16, 2019, 9:30 a.m.