API for protiq
Protein (identification and) quantification based on peptide evidence
| Global functions | |
|---|---|
| buildBipartiteGraph | Source code |
| checkInputData | Man page Source code |
| checkInputData.scampi | Man page Source code |
| estimateLSEparam | Source code |
| estimateMLEparam | Source code |
| estimateModelParameters | Man page Source code |
| getBetaContribLSE | Source code |
| getCCnlL | Source code |
| getCovU | Man page Source code |
| getDmat | Source code |
| getMyCCNr | Source code |
| getMyNeighborhoodSize | Source code |
| getMyPeptides | Source code |
| getMyProteins | Source code |
| getProtId | Source code |
| getSampleCov | Source code |
| getTauContribLSE | Source code |
| getTopNScore | Source code |
| isInCC | Source code |
| iterateScampi | Man page Source code |
| leptoSRM | Man page |
| leptoSRMedgespp | Man page |
| leptoSRMpeptides | Man page |
| leptoSRMproteins | Man page |
| nlLtoMinimize | Source code |
| plot,scampi,missing-method | Man page |
| plot,scampiVal,missing-method | Man page |
| plot.scampi | Source code |
| plot.scampiVal | Source code |
| plotCC | Source code |
| preprocessCC | Source code |
| preprocessInputData | Man page Source code |
| preprocessInputData.scampi | Man page Source code |
| protiq | Man page |
| protiq-package | Man page |
| quantifyPeptide | Man page Source code |
| quantifyProtein | Man page Source code |
| quantifyProteins | Man page Source code |
| replacePepNumbers | Source code |
| replaceProtNumbers | Source code |
| runScampi | Man page Source code |
| sampleInitialVector | Source code |
| scampi | Man page Source code |
| scampi-class | Man page |
| scampiVal | Man page Source code |
| scampiVal-class | Man page |
| show,scampi-method | Man page |
| show,scampiVal-method | Man page |
| show.scampi | Source code |
| show.scampiVal | Source code |
| summary,scampi-method | Man page |
| summary,scampiVal-method | Man page |
| summary.scampi | Source code |
| summary.scampiVal | Source code |
