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prozor: Minimal Protein Set Explaining Peptide Spectrum Matches
Determine minimal protein set explaining peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants. Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein level. Computing dynamic swath window sizes based on MS1 or MS2 signal distributions.
Getting started
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Package details |
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| Author | Witold Wolski [aut, cre] (<https://orcid.org/0000-0002-6468-120X>) |
| Bioconductor views | ExperimentHubSoftware MassSpectrometry Proteomics Software |
| Maintainer | Witold Wolski <wewolski@gmail.com> |
| License | GPL-3 |
| Version | 0.3.1 |
| URL | https://github.com/protviz/prozor |
| Package repository | View on CRAN |
| Installation |
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