prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

Determine minimal protein set explaining peptide spectrum matches.

Author
Witold Wolski
Date of publication
2015-09-05 09:50:30
Maintainer
Witold Wolski <wewolski@gmail.com>
License
GPL-3
Version
0.1.1
URLs

View on CRAN

Man pages

annotatePeptides
annotate peptides with protein ids
greedy
given matrix (columns protein rows peptides), compute minimal...
pepdata
Table containing peptide information
prepareMatrix
given table of peptide protein assigments generate matrix
protpepmeta
Generated from pepdata using method annotatePeptides
protpepmetashort
Small version of prot meta dataset to speed up computation
prozor
Minimal Protein set Explaining Peptides

Files in this package

prozor
prozor/inst
prozor/inst/extdata
prozor/inst/extdata/shortfasta.fasta
prozor/NAMESPACE
prozor/data
prozor/data/pepdata.tab.gz
prozor/data/protpepmetashort.tab
prozor/data/protpepmeta.tab.gz
prozor/R
prozor/R/prepareMatrix.R
prozor/R/annotatePeptides.R
prozor/R/greedy.R
prozor/R/hello.R
prozor/README.md
prozor/MD5
prozor/DESCRIPTION
prozor/man
prozor/man/greedy.Rd
prozor/man/annotatePeptides.Rd
prozor/man/prepareMatrix.Rd
prozor/man/pepdata.Rd
prozor/man/prozor.Rd
prozor/man/protpepmetashort.Rd
prozor/man/protpepmeta.Rd