makeIDUnip: make id for chain compatible with uniprot

In prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

Description

make id for chain compatible with uniprot

Usage

makeIDUnip(sequence, id, sp)

Arguments

sequence	- aa sequence as string
id	uniprot id id: sp|P30443|1A01_HUMAN
sp	start position of chain numeric

Value

string consisting of sp,"-", length of sequnce

Examples

seq <- "MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGR\
GEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRN\
MKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQ\
DAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRC\
VDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEI\
TLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQ\
HEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRK\
SSDRKGGSYTQAASSDSAQGSDVSLTACKV"
nam <-"sp|P30443|1A01_HUMAN"
sp <- 24
makeIDUnip(seq, nam, sp)

prozor documentation built on Dec. 11, 2021, 9:51 a.m.