writeFasta: write fasta lists into file

Description Usage Arguments Value Examples

View source: R/writeFasta.R

Description

peptides which do not have protein assignment drop out

Usage

1

Arguments

file

where to write

...

fasta list or single file

Value

writes a file.

Examples

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#example how to create a protein db with decoy sequences
library(seqinr)
#library(prozor)
file = system.file("extdata/fgcz_contaminants2021_20210929.fasta.gz",package = "prozor")
fasta = readPeptideFasta(file = file)
revfasta <- reverseSeq(fasta)
decoyDB <- c(fasta,revfasta)
stopifnot(length(decoyDB) == 2 * length(fasta))
## Not run: 
writeFasta(decoyDB, file="test.fasta")

## End(Not run)

prozor documentation built on Dec. 11, 2021, 9:51 a.m.