Description Usage Arguments Details Note Author(s) See Also Examples

Draw a X Y scatter plot with associated X and Y histograms with estimated densities. Will also draw density plots by groups, as well as distribution ellipses by group. Partly a demonstration of the use of layout. Also includes lowess smooth or linear model slope, as well as correlation.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | ```
scatterHist(x,y=NULL,smooth=TRUE,ab=FALSE, correl=TRUE,data=NULL, density=TRUE,means=TRUE,
ellipse=TRUE,digits=2,method="pearson",cex.cor=1,cex.point=1,
title="Scatter plot + density",
xlab=NULL,ylab=NULL,smoother=FALSE,nrpoints=0,xlab.hist=NULL,ylab.hist=NULL,grid=FALSE,
xlim=NULL,ylim=NULL,x.breaks=11,y.breaks=11,
x.space=0,y.space=0,freq=TRUE,x.axes=TRUE,y.axes=TRUE,size=c(1,2),
col=c("blue","red","black"),legend=NULL,alpha=.5,pch=21, show.d=TRUE,
x.arrow=NULL,y.arrow=NULL,d.arrow=FALSE,cex.arrow=1,...)
scatter.hist(x,y=NULL,smooth=TRUE,ab=FALSE, correl=TRUE,data=NULL,density=TRUE,
means=TRUE, ellipse=TRUE,digits=2,method="pearson",cex.cor=1,cex.point=1,
title="Scatter plot + density",
xlab=NULL,ylab=NULL,smoother=FALSE,nrpoints=0,xlab.hist=NULL,ylab.hist=NULL,grid=FALSE,
xlim=NULL,ylim=NULL,x.breaks=11,y.breaks=11,
x.space=0,y.space=0,freq=TRUE,x.axes=TRUE,y.axes=TRUE,size=c(1,2),
col=c("blue","red","black"),legend=NULL,alpha=.5,pch=21, show.d=TRUE,
x.arrow=NULL,y.arrow=NULL,d.arrow=FALSE,cex.arrow=1,...)
``` |

`x` |
The X vector, or the first column of a data.frame or matrix. Can be specified using formula input. |

`y` |
The Y vector, of if X is a data.frame or matrix, the second column of X |

`smooth` |
if TRUE, then add a loess smooth to the plot |

`ab` |
if TRUE, then show the best fitting linear fit |

`correl` |
TRUE: Show the correlation |

`data` |
if using formula input, the data must be specified |

`density` |
TRUE: Show the estimated densities |

`means` |
TRUE |

If TRUE, show the means for the distributions.

`ellipse` |
TRUE: draw 1 and 2 sigma ellipses and smooth |

`digits` |
How many digits to use if showing the correlation |

`method` |
Which method to use for correlation ("pearson","spearman","kendall") defaults to "pearson" |

`smoother` |
if TRUE, use smoothScatter instead of plot. Nice for large N. |

`nrpoints` |
If using smoothScatter, show nrpoints as dots. Defaults to 0 |

`grid` |
If TRUE, show a grid for the scatter plot. |

`cex.cor` |
Adjustment for the size of the correlation |

`cex.point` |
Adjustment for the size of the data points |

`xlab` |
Label for the x axis |

`ylab` |
Label for the y axis |

`xlim` |
Allow specification for limits of x axis, although this seems to just work for the scatter plots. |

`ylim` |
Allow specification for limits of y axis |

`x.breaks` |
Number of breaks to suggest to the x axis histogram. |

`y.breaks` |
Number of breaks to suggest to the y axis histogram. |

`x.space` |
space between bars |

`y.space` |
Space between y bars |

`freq` |
Show frequency counts, otherwise show density counts |

`x.axes` |
Show the x axis for the x histogram |

`y.axes` |
Show the y axis for the y histogram |

`size` |
The sizes of the ellipses (in sd units). Defaults to 1,2 |

`col` |
Colors to use when showing groups |

`alpha` |
Amount of transparency in the density plots |

`legend` |
Where to put a legend c("topleft","topright","top","left","right") |

`pch` |
Base plot character (each group is one more) |

`xlab.hist` |
Not currently available |

`ylab.hist` |
Label for y axis histogram. Not currently available. |

`title` |
An optional title |

`show.d` |
If TRUE, show the distances between the groups |

`d.arrow` |
If TRUE, draw an arrow between the two centroids |

`x.arrow` |
optional lable for the arrow connecting the two groups for the x axis |

`y.arrow` |
optional lable for the arrow connecting the two groups for the y axis |

`cex.arrow` |
cex control for the label size of the arrows. |

`...` |
Other parameters for graphics |

Just a straightforward application of layout and barplot, with some tricks taken from `pairs.panels`

. The various options allow for correlation ellipses (1 and 2 sigma from the mean), lowess smooths, linear fits, density curves on the histograms, and the value of the correlation. ellipse = TRUE implies smooth = TRUE. The grid option provides a background grid to the scatterplot.

If using grouping variables, will draw ellipses (defaults to 1 sd) around each centroid. This is useful when demonstrating Mahalanobis distances.

Formula input allows specification of grouping variables as well. )

For plotting data for two groups, Mahalobnis differences between the groups may be shown by drawing an arrow between the two centroids. This is a bit messy and it is useful to use pch="." in this case.

Originally adapted from Addicted to R example 78. Modified following some nice suggestions from Jared Smith. Substantial revisions in 2021 to allow for a clearer demonstration of group differences.

William Revelle

`pairs.panels`

for multiple plots, `multi.hist`

for multiple histograms.

1 2 3 4 5 6 7 8 | ```
data(sat.act)
with(sat.act,scatterHist(SATV,SATQ))
scatterHist(SATV ~ SATQ,data=sat.act) #formula input
#or for something a bit more splashy
scatter.hist(sat.act[5:6],pch=(19+sat.act$gender),col=c("blue","red")[sat.act$gender],grid=TRUE)
#better yet
scatterHist(SATV ~ SATQ + gender,data=sat.act) #formula input with a grouping variable
``` |

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