Man pages for r3dmol
Create Interactive 3D Visualizations of Molecular Data
| add_model | Create and add model to viewer |
| cif_254385 | Cif file example |
| cube_benzene_homo | Gaussian cube file example |
| dot-m_multi_spec | List of multiple start/stop locations. |
| init | Initialise a WebGL-based viewer |
| m_add_anyShape | Create and add shape |
| m_add_arrow | Add arrow shape |
| m_add_as_one_molecule | Create and add model to viewer |
| m_add_custom | Add custom shape component from user supplied function |
| m_add_cylinder | Add Cylinder Between Points |
| m_add_isosurface | Construct isosurface from volumetric data in gaussian cube... |
| m_add_label | Add label to viewer |
| m_add_line | Add Lines Between Points |
| m_add_models_as_frames | Create and add model to viewer |
| m_add_outline | Add colored outline to all objects in scene. |
| m_add_property_labels | Add property labels |
| m_add_res_labels | Add Residue Labels |
| m_add_shape | Add shape object to viewer |
| m_add_sphere | Add Sphere Shape |
| m_add_style | Overwrite Previous Style |
| m_add_surface | Add surface representation to atoms |
| m_animate | Animate all models in viewer from their respective frames |
| m_bio3d | Load structure from package bio3d |
| m_button | Add button into viewer |
| m_center | Re-center the viewer around the provided selection |
| m_clear | Clear scene of all objects |
| m_create_model_from | Create a new model from atoms specified by sel |
| m_enable_fog | Enable/disable fog for content far from the camera |
| m_fetch_pdb | Fetch Structure from PDB |
| m_get_model | Return specified model |
| m_glimpse | Quickly View Given Structure |
| m_grid | Create a grid of viewers that share a WebGL canvas |
| m_is_animated | Get viewer animate status |
| m_multi_resi_sel | Selection Across Multiple Residues |
| m_png | Convert widgets to PNG image |
| m_remove_all_labels | Remove all labels from viewer |
| m_remove_all_models | Delete all existing models |
| m_remove_all_shapes | Remove all shape objects from viewer |
| m_remove_all_surfaces | Remove all labels from viewer |
| m_remove_label | Remove label from viewer |
| m_render | Render current state of viewer |
| m_rotate | Rotate scene by angle degrees around axis |
| m_sel | Selection Function for r3dmol |
| m_set_color_by_element | Set color by element |
| m_set_default_cartoon_quality | Set the default cartoon quality for newly created models |
| m_set_hover_duration | Set the duration of the hover delay |
| m_set_preceived_distance | Set the distance between the model and the camera |
| m_set_projection | Set view projection scheme |
| m_set_slab | Set slab of view |
| m_set_style | Add Style to Selection |
| m_set_view | Sets the view to the specified translation, zoom, rotation... |
| m_set_viewer | Set viewer properties |
| m_set_zoom_limits | Set lower and upper limit stops for zoom |
| m_shape_spec | Specify Styling for Generic Shapes |
| m_shiny_demo | Run examples of using 'r3dmol' in a Shiny app |
| m_spin | Continuously rotate a scene around the specified axis |
| m_stop_animate | Stop animation of all models in viewer |
| m_style_cartoon | Specify Styling for Cartoon |
| m_style_label | Specify Styling for Labels |
| m_style_line | Specify Styling for Lines |
| m_style_sphere | Specify Styling for Sphere |
| m_style_stick | Specify Styling for Stick |
| m_style_surface | Specify Styling for Surface |
| m_translate | Translate current view or models by x,y screen coordinates |
| m_unit_cell | Unit cell visualization |
| m_vector3 | Create a 3 dimensional vector |
| m_vibrate | Add model's vibration |
| m_viewer_spec | Specifying setup options for viewer |
| m_zoom | Zoom current view by a constant factor |
| m_zoom_to | Zoom to center of atom selection |
| pdb_1j72 | Crystal Structure of Mutant Macrophage Capping Protein (Cap... |
| pdb_6zsl | Crystal structure of the SARS-CoV-2 helicase at 1.94 Angstrom... |
| r3dmol-shiny | Shiny bindings for r3dmol |
| reexports | Objects exported from other packages |
| sdf_multiple | Multiple sdf file example |
| xyz_multiple | Multiple xyz file example |
