Files in rPDBapi

A Comprehensive Interface for Accessing the Protein Data Bank

NEWS.md README.md R/handle_api_errors.R R/internal_fetch.R R/id_helpers.R R/batch_cache_api.R R/describe_chemical.R R/99_global_variables.R R/SequenceOperator.R R/get_info.R R/find_papers.R R/01_contracts.R R/analysis_helpers.R R/internal_schema.R R/object_model.R R/rPDBapi-package.R R/find_results.R R/perform_search.R R/ChemicalOperator.R R/parse_response.R R/walk_nested_dict.R R/return_data_as_dataframe.R R/query_search.R R/internal_http.R R/internal_query.R R/internal_cache_retry.R R/schema_helpers.R R/fetch_data.R R/TextOperators.R R/get_pdb_file.R R/data_fetcher.R R/internal_search.R R/search_graphql.R R/add_property.R R/get_fasta_from_rcsb_entry.R R/parse_fasta_text_to_list.R R/SeqMotifOperator.R R/search_client.R R/send_api_request.R R/StructureOperator.R R/00_globals.R R/generate_json_query.R R/get_pdb_api_url.R inst/doc/rPDBapi-structural-bioinformatics.R inst/doc/rPDBapi-structural-bioinformatics.Rmd tests/testthat.R tests/testthat/test_query_search.R tests/testthat/test_add_property.R tests/testthat/test_request_encoding.R tests/testthat/test_fetch_data.R tests/testthat/test_data_fetcher.R tests/testthat/test_milestone5_schema_layer.R tests/testthat/test_get_pdb_file_structfact.R tests/testthat/test_milestone1_backward_compatibility_exports.R tests/testthat/test_infer_search_service.R tests/testthat/test_RangeOperator.R tests/testthat/test_RequestOptions.R tests/testthat/test_perform_search.R tests/testthat/test_ExistsOperator.R tests/testthat/test_ContainsWordsOperator.R tests/testthat/test_milestone4_identifier_system.R tests/testthat/test_get_fasta_from_rcsb_entry.R tests/testthat/test_milestone6_batch_cache.R tests/testthat/test_DefaultOperator.R tests/testthat/test_find_results.R tests/testthat/test_query_search_scan_params.R tests/testthat/test_QueryGroup.R tests/testthat/test_ComparisonOperator.R tests/testthat/test_api_contracts.R tests/testthat/test_ExactMatchOperator.R tests/testthat/test_milestone7_object_model_analysis_helpers.R tests/testthat/test_get_pdb_file.R tests/testthat/helper_live.R tests/testthat/test_return_data_as_dataframe.R tests/testthat/test_milestone2_internal_modules.R tests/testthat/test_get_info.R tests/testthat/test_milestone3_error_contracts.R tests/testthat/test_group_query_serialization.R tests/testthat/test_ContainsPhraseOperator.R tests/testthat/test_InOperator.R tests/testthat/test_ScoredResult.R tests/testthat/test_milestone1_additional_export_contracts.R tests/testthat/test_QueryNode.R tests/testthat/test_citation_field_compatibility.R tests/testthat/test_perform_search_return_type.R vignettes/rPDBapi-structural-bioinformatics.Rmd man/InOperator.Rd man/infer_id_type.Rd man/add_property.Rd man/ContainsPhraseOperator.Rd man/get_pdb_file.Rd man/describe_chemical.Rd man/summarize_entries.Rd man/ComparisonOperator.Rd man/search_graphql.Rd man/send_api_request.Rd man/handle_api_errors.Rd man/walk_nested_dict.Rd man/data_fetcher.Rd man/QueryGroup.Rd man/find_papers.Rd man/build_entity_id.Rd man/data_fetcher_batch.Rd man/parse_fasta_text_to_list.Rd man/SequenceOperator.Rd man/rPDBapi-package.Rd man/ExactMatchOperator.Rd man/as_rpdb_structure.Rd man/return_data_as_dataframe.Rd man/DefaultOperator.Rd man/extract_ligand_table.Rd man/join_structure_sequence.Rd man/ChemicalOperator.Rd man/get_info.Rd man/ContainsWordsOperator.Rd man/StructureOperator.Rd man/build_entry_id.Rd man/as_rpdb_chemical_component.Rd man/infer_search_service.Rd man/QueryNode.Rd man/build_assembly_id.Rd man/build_instance_id.Rd man/SeqMotifOperator.Rd man/ScoredResult.Rd man/perform_search.Rd man/RequestOptions.Rd man/generate_json_query.Rd man/as_rpdb_assembly.Rd man/query_search.Rd man/get_pdb_api_url.Rd man/get_fasta_from_rcsb_entry.Rd man/fetch_data.Rd man/as_rpdb_entry.Rd man/ExistsOperator.Rd man/list_rcsb_fields.Rd man/clear_rpdbapi_cache.Rd man/RangeOperator.Rd man/extract_calpha_coordinates.Rd man/summarize_assemblies.Rd man/autoresolve_sequence_type.Rd man/as_rpdb_polymer_entity.Rd man/extract_taxonomy_table.Rd man/cache_info.Rd man/parse_response.Rd man/validate_properties.Rd man/search_rcsb_fields.Rd man/find_results.Rd man/parse_rcsb_id.Rd