runProcessing: This is a wrapper function to process a SHAPE run and extract...
In rSHAPE: Simulated Haploid Asexual Population Evolution

This is a wrapper function to process a SHAPE run and extract meaningful summary information.

runProcessing(func_saveFile, func_subNaming, func_stepsCon,
  func_landscapeCon, func_hoodCon, func_estProp, func_size_timeStep,
  func_processObjects = getOption("shape_processedObjects"),
  func_hoodPriority = getOption("shape_const_hoodDepth"))

`func_saveFile`	This is the filepath where the SHAPE run processed objects are to be saved.
`func_subNaming`	This is a logical which controls if the tables which report on all genotypes with X mutations should be forced into a single table or it SHAPE is allowed to split them into multiple tables.
`func_stepsCon`	This is the filepath to an SQLite database storing information for the stepwise changes of a SHAPE run.
`func_landscapeCon`	This is the filepath to an SQLite database storing information for the complete explored and neighbouring fitness landscape of a SHAPE run.
`func_hoodCon`	This is the filepath to an SQLite database storing information for high priority mutational neighbourhood information
`func_estProp`	This value is used to define the threshold size required for a population before it is considered established.
`func_size_timeStep`	This is the proportion of a standard biological generation being considered to be within a single time step.
`func_processObjects`	This is a vector of character strings which define the names of what objects will be produced and creates a global objects. DO NOT CHANGE THESE VALUES.
`func_hoodPriority`	This is an object to control which strains we get deep neighbourhood information for It should be one of "none","limited","priority","full" setting this higher will cost more and more in post analysis runtime.