reportPopulations: This is a convenience function to ensure that our population...
In rSHAPE: Simulated Haploid Asexual Population Evolution

Description Usage Arguments Value Examples

This is a convenience function to ensure that our population demographics are stored in a data frame and exists because R's standard functions can collapse single row frames to named vectors. It requires that all passed vectors be of the same length

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reportPopulations(func_numMuts, func_genotypeID, func_popSizes,
  func_fitnesses, func_births, func_deaths, func_mutants, func_progenitor,
  func_reportMat_colnames = getOption("shape_reportMat_colnames"))

`func_numMuts`	This is a vector of the number of mutations held within each tracked genotype.
`func_genotypeID`	This is a vector of the unique genotype ID for each tracked population in the community.
`func_popSizes`	This is a vector of the number of individuals for each population of genotypes in the community.
`func_fitnesses`	This is a vector of the fitness for each genotpe being tracked.
`func_births`	This is a vector of the number of births produced by each population in this time step.
`func_deaths`	This is a vector of the number of deaths in each population in this time step.
`func_mutants`	This is a vector of the number of mutants produced by each population in this time step.
`func_progenitor`	This is a vector of character strings expressing any progenitor genotypes which generated a mutant that fed into each genotype's population in this time step.
`func_reportMat_colnames`	DO NOT MODIFY - This is the vector of character strings to be assigned as the column names.

A data frame with columns named as per func_reportMat_colnames.

# This returns a data.frame with a standard format
defineSHAPE()
reportPopulations(1:3,2:4,c(10,50,100),rep(1,3),
                 rep(0,3),c(10,10,10),c(1,2,0),c("","0_->_1","2"))