set_const_RMF_globalOptima: This function samples the space of all possible genotypes and...

In rSHAPE: Simulated Haploid Asexual Population Evolution

Description

This function samples the space of all possible genotypes and then defines one that will be considered as the independent fitness contribution global optima.

Usage

set_const_RMF_globalOptima(func_simModel = getOption("shape_simModel"),
  func_genomeLength = getOption("shape_genomeLength"),
  func_initDistance = getOption("shape_const_RMF_initiDistance"),
  func_sepString = getOption("shape_sepString"))

Arguments

func_simModel	This is the fitness landscape model being simulated
func_genomeLength	The number of sites in the genome being simulated
func_initDistance	This is the number of mutations found in the global optimal genotype
func_sepString	This is the string collapse separator used in the run

Value

A character string of genome positions at which there ought to be mutations to be optimal

Note

There is no example as this cannot work outisde of a runSHAPE call, it requires data produced by the simulation experiment.

rSHAPE documentation built on July 19, 2019, 5:05 p.m.