set_DepbySite_ancestFitness: This is a convenience function for setting the dependent...

In rSHAPE: Simulated Haploid Asexual Population Evolution

Description

This is a convenience function for setting the dependent fitness values of sites in an NK fitness landscape model. This allows the dependent fitness of sites to be calculated once and then referenced as mutations occur. It makes exploring this style of fitness landscape a bit more computationally friendly - as it generally isn't.

Usage

set_DepbySite_ancestFitness(func_simModel = getOption("shape_simModel"),
  func_const_siteBystate_fitnessMat = getOption("shape_const_siteBystate_fitnessMat"),
  func_const_NK_interactionMat = getOption("shape_const_NK_interactionMat"))

Arguments

func_simModel	This is the fitness landscape model being simulated
func_const_siteBystate_fitnessMat	This is the sitewise independent fitness contributions in the fitness landscape
func_const_NK_interactionMat	This defines the sitewise dependencies based on the K interactions.

Value

Either the dependent sitewise fitness contributions in an NK fitness landscape, or NA.

Note

There is no example as this cannot work outisde of a runSHAPE call, it requires data produced by the simulation experiment.

rSHAPE documentation built on July 19, 2019, 5:05 p.m.