rave_command_line_path: Find and execute external command-line tools

In raveio: File-System Toolbox for RAVE Project

Find and execute external command-line tools

Description

Find and execute external command-line tools

Usage

normalize_commandline_path(
  path,
  type = c("dcm2niix", "freesurfer", "fsl", "afni", "others"),
  unset = NA
)

cmd_dcm2niix(error_on_missing = TRUE, unset = NA)

cmd_freesurfer_home(error_on_missing = TRUE, unset = NA)

cmd_fsl_home(error_on_missing = TRUE, unset = NA)

cmd_afni_home(error_on_missing = TRUE, unset = NA)

cmd_homebrew(error_on_missing = TRUE, unset = NA)

is_dry_run()

Arguments

path	path to normalize
type	type of command
unset	default to return if the command is not found
error_on_missing	whether to raise errors if command is missing

Value

Normalized path to the command, or unset if command is missing.

raveio documentation built on July 26, 2023, 5:29 p.m.