rba_uniprot_ptm: Get Post-Translational Modification of UniProt Protein...

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

Get Post-Translational Modification of UniProt Protein (Deprecated)

Description

This function is Deprecated. Please use rba_uniprot_proteomics_ptm instead.
UniProt maps post-translational modification features from different sources to the proteins' sequences. Using this function, you can retrieve all the post-translational modification features that has been map to a given UniProt protein's sequence.

Usage

rba_uniprot_ptm(accession, ...)

Arguments

accession	UniProtKB primary or secondary accession.
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Details

see also: PTM / Processing section in UniProtKB

Value

A list containing the post-translational modification features of your supplied UniProt protein's sequence.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics-ptm/{accession}"

References

• The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100

• Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

• Proteins API Documentation

• Citations note on UniProt website

See Also

Other "Deprecated functions": rba_uniprot_proteomics(), rba_uniprot_proteomics_search(), rba_uniprot_ptm_search()

Examples

## Not run: 
#Deprecated
rba_uniprot_ptm(accession = "P04234")

## End(Not run)

rbioapi documentation built on April 4, 2025, 5:04 a.m.