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rbiom: Read/Write, Analyze, and Visualize 'BIOM' Data
A toolkit for working with Biological Observation Matrix ('BIOM') files. Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and beta diversity (including 'UniFrac'). Summarize counts by taxonomic level. Subset based on metadata. Generate visualizations and statistical analyses. CPU intensive operations are coded in C for speed.
Getting started
Browse package contents
Package details |
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| Author | Daniel P. Smith [aut, cre] (<https://orcid.org/0000-0002-2479-2044>), Alkek Center for Metagenomics and Microbiome Research [cph, fnd] |
| Maintainer | Daniel P. Smith <dansmith01@gmail.com> |
| License | MIT + file LICENSE |
| Version | 2.1.2 |
| URL | https://cmmr.github.io/rbiom/ https://github.com/cmmr/rbiom |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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Try the rbiom package in your browser
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