rbiom: Read/Write, Transform, and Summarize 'BIOM' Data

A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

Getting started

Package details

AuthorDaniel P. Smith [aut, cre, cph] (<https://orcid.org/0000-0002-2479-2044>)
MaintainerDaniel P. Smith <dansmith@orst.edu>
URL https://cmmr.github.io/rbiom/index.html
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

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rbiom documentation built on Nov. 5, 2021, 9:11 a.m.