as.matrix.rbiom: Convert an rbiom object to a simple count matrix.
In rbiom: Read/Write, Analyze, and Visualize 'BIOM' Data
as.matrix.rbiom R Documentation
Convert an rbiom object to a simple count matrix.
Description
Identical to running as.matrix(biom$counts).
Usage
## S3 method for class 'rbiom'
as.matrix(x, ...)
Arguments
x
An rbiom object, such as from as_rbiom().
...
Not used.
Value
A base R matrix with OTUs as rows and samples as columns.
See Also
Other conversion:
as.list.rbiom()
Examples
library(rbiom)
as.matrix(hmp50)[1:5,1:5]
rbiom documentation built on April 3, 2025, 6:39 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| as.matrix.rbiom | R Documentation |
Convert an rbiom object to a simple count matrix.
Description
Identical to running as.matrix(biom$counts).
Usage
## S3 method for class 'rbiom'
as.matrix(x, ...)
Arguments
x |
An rbiom object, such as from |
... |
Not used. |
Value
A base R matrix with OTUs as rows and samples as columns.
See Also
Other conversion:
as.list.rbiom()
Examples
library(rbiom)
as.matrix(hmp50)[1:5,1:5]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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