reda: Recurrent Event Data Analysis
Version 0.3.1

Functions that fit gamma frailty model with spline or piecewise constant baseline rate function for recurrent event data, compute and plot parametric mean cumulative function (MCF) from a fitted model as well as nonparametric sample MCF (Nelson-Aalen estimator) are provided. Most functions are S4 methods that produce S4 class objects.

AuthorWenjie Wang [aut, cre], Haoda Fu [aut], Jun Yan [ctb]
Date of publication2016-12-16 08:34:03
MaintainerWenjie Wang <wenjie.2.wang@uconn.edu>
LicenseGPL (>= 3)
Version0.3.1
URL https://github.com/wenjie2wang/reda
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("reda")

Getting started

Package overview
README.md
Introduction to reda by Examples

Popular man pages

baseRate: Estimated Baseline Rate Function
BIC-rateReg-method: Bayesian Information Criterion (BIC)
mcf: Mean Cumulative Function (MCF)
rateReg: Recurrent Events Regression Based on Counts and Rate Function
reda-package: Recurrent Event Data Analysis
show-method: Show an object.
valveSeats: Valve Seats Dataset
See all...

All man pages Function index File listing

Man pages

AIC-rateReg-method: Akaike Information Criterion (AIC)
baseRate: Estimated Baseline Rate Function
baseRateReg-class: An S4 Class to Represent Estimated Baseline Rate Function
BIC-rateReg-method: Bayesian Information Criterion (BIC)
coef-rateReg-method: Estimated Coefficients of Covariates
confint-rateReg-method: Confidence Intervals for Covariate Coefficients
mcf: Mean Cumulative Function (MCF)
plot-method: Plot Baseline Rate or Mean Cumulative Function (MCF)
rateReg: Recurrent Events Regression Based on Counts and Rate Function
rateReg-class: An S4 Class to Represent a Fitted Model
rateRegMcf-class: An S4 Class to Respresent Estimated MCF from a Fitted Model
reda-package: Recurrent Event Data Analysis
sampleMcf-class: An S4 Class to Represent Sample MCF
show-method: Show an object.
simuDat: Simulated Sample Dataset for Demonstration
summaryRateReg-class: An S4 Class to Represent Summary of a Fitted Model
summary-rateReg-method: Summarizing a Fitted Model
Survr: Formula Response for Recurrent Event Data
valveSeats: Valve Seats Dataset

Functions

AIC,rateReg-method Man page
BIC,rateReg-method Man page
Survr Man page Source code
abic Source code
baseRate Man page
baseRate,rateReg-method Man page
baseRateReg-class Man page
check_Survr Source code
coef,rateReg-method Man page
confint,rateReg-method Man page
gg_color_hue Source code
gradDelta Source code
logL_rateReg Source code
mcf Man page
mcf,formula-method Man page
mcf,rateReg-method Man page
nObsFun Source code
nameBases Source code
objCheck Source code
plot,baseRateReg,missing-method Man page
plot,baseRateReg-method Man page
plot,rateRegMcf,missing-method Man page
plot,rateRegMcf-method Man page
plot,sampleMcf,missing-method Man page
plot,sampleMcf-method Man page
plot-method Man page
rateReg Man page Source code
rateReg-class Man page
rateRegMcf-class Man page
rateReg_control Source code
rateReg_mcf_control Source code
rateReg_start Source code
reda-package Man page
sMcf Source code
sampleMcf-class Man page
show,rateReg-method Man page
show,rateRegMcf-method Man page
show,sampleMcf-method Man page
show,summaryRateReg-method Man page
show-method Man page
simuDat Man page
sumDf Source code
summary,rateReg-method Man page
summaryRateReg-class Man page
valveSeats Man page

Files

inst
inst/CITATION
inst/bib
inst/bib/reda-intro.bib
inst/doc
inst/doc/reda-intro.R
inst/doc/reda-intro.Rmd
inst/doc/reda-intro.html
NAMESPACE
NEWS.md
data
data/valveSeats.RData
data/simuDat.RData
R
R/reda.R
R/dataCheck.R
R/plot.R
R/aic.R
R/show.R
R/data.R
R/coef.R
R/mcf.R
R/fit.R
R/summary.R
R/baseline.R
R/class.R
vignettes
vignettes/reda-intro.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/coef-rateReg-method.Rd
man/rateRegMcf-class.Rd
man/baseRate.Rd
man/rateReg-class.Rd
man/confint-rateReg-method.Rd
man/summary-rateReg-method.Rd
man/valveSeats.Rd
man/Survr.Rd
man/reda-package.Rd
man/BIC-rateReg-method.Rd
man/mcf.Rd
man/AIC-rateReg-method.Rd
man/show-method.Rd
man/baseRateReg-class.Rd
man/sampleMcf-class.Rd
man/plot-method.Rd
man/simuDat.Rd
man/summaryRateReg-class.Rd
man/rateReg.Rd
reda documentation built on May 19, 2017, 8:54 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.