Description Usage Format Author(s) Examples
This dataset replicates the structure of disease outbreak line lists, where the unit of observation is a case. It contains a mixture of patient meta-data (e.g. gender, name) and time-stamped records (e.g. hospital admission).
1 |
A data.frame with 5 rows and 16 columns containing the following variables:
id ID of the patient
name name of the patient
dob date of birth of the patient (format: yyyy-mm-dd)
gender gender of the patient
date.of.onset date of symptom onsets
date.of.admission date of hospital admission
date.of.discharge date of hospital discharge
hospital hospital of admission
fever has fever been observed? (yes/no)
sleepy has the patient been sleepy? (yes/no)
contact1.id ID of contact 1
contact1.date date of contact 1
contact2.id ID of contact 2
contact2.date date of contact 2
contact3.id ID of contact 3
contact3.date date of contact 3
Thibaut Jombart thibautjombart@gmail.com
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 | data(toyll)
toyll
toyll$date.of.onset <- as.POSIXct(toyll$date.of.onset)
toyll$date.of.admission <- as.POSIXct(toyll$date.of.admission)
toyll$date.of.discharge <- as.POSIXct(toyll$date.of.discharge)
toyll$contact1.date <- as.POSIXct(toyll$contact1.date)
toyll$contact2.date <- as.POSIXct(toyll$contact2.date)
toyll$contact3.date <- as.POSIXct(toyll$contact3.date)
ind.fields <- c(names(toyll)[1:5], "hospital", "fever", "sleepy")
x <- as.ejObject(toyll,
recordAttributes=ind.fields,
eventDefinitions=list(
define_ejEvent(name="admission", date="date.of.admission"),
define_ejEvent(name="discharge", date="date.of.discharge"),
define_ejEvent(name="contact1", date="contact1.date", attributes="contact1.id"),
define_ejEvent(name="contact2", date="contact2.date", attributes="contact2.id"),
define_ejEvent(name="contact3", date="contact3.date", attributes="contact3.id")
))
x
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